Triticum dicoccoides (wild emmer wheat): 119304091
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Entry
119304091 CDS
T07278
Name
(RefSeq) pre-mRNA-processing factor 19-like isoform X1
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03040
Spliceosome
tdc04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119304091
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
119304091
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tdc03041
]
119304091
04121 Ubiquitin system [BR:
tdc04121
]
119304091
03400 DNA repair and recombination proteins [BR:
tdc03400
]
119304091
Enzymes [BR:
tdc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119304091
Spliceosome [BR:
tdc03041
]
Complex B
Other components
Prp19 complex
119304091
Complex C
Prp19-CDC5 complex
119304091
Ubiquitin system [BR:
tdc04121
]
Ubiquitin ligases (E3)
U-box type E3
119304091
DNA repair and recombination proteins [BR:
tdc03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
119304091
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
Beta-prop_THOC3
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40
Prp19
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_CDC20-Fz
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR3_2nd
WD40_MABP1-WDR62_2nd
WD40_Gbeta
WDR55
Beta-prop_TEP1_2nd
EIF3I
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_SCAP
Beta-prop_IFT140_1st
Beta-prop_DCAF12
Beta-prop_Vps41
Beta-prop_WDR75_1st
Beta-prop_TEP1_C
Beta-prop_WDR19_1st
Beta-prop_HPS5
Beta-prop_RIG_2nd
Beta-prop_EIPR1
PROPPIN
Beta-prop_WDR41
NBCH_WD40
Beta-prop_VPS8
PEP5_VPS11_N
Beta-prop_DCAF4
RMC1_N
WDR90_beta-prop_4th
Beta-prop_RSE1_2nd
Beta-prop_NWD2_C
zf-Nse
PAS_11
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
119304091
NCBI-ProteinID:
XP_037437150
LinkDB
All DBs
Position
5A:679589185..679595664
Genome browser
AA seq
588 aa
AA seq
DB search
MICAISGEVPEDPVLSTKSGLLFERRLIRRYIEVTTVSPALGFASGARPCAWAFFPDFVL
VLVPQDHGKCPVTKEELAMDDLVTVKTNKIPKPRPLQAASVPGLLGMFQNEWDALMLSNF
ALEQQLHTARQELSHALYQHDAACRVIARLKKERDESRTLLAQAERQIPISAAGPVPVAA
VTNGKRGFHHSNMSKPNLFVCSALILFPGYTALEDEVGPDGKKIRPGINPVIIDELTECN
SVLSAQRKKRQVPPSLAPIDALERYTQISSHPLHKTNKPGILSIDIHHSKDIIATGGIDT
NAVLFDRPSGQVLCTLTDHSKKITSLKFVPRDELLITGSADKTVRVWQGNEDGSYGCRHT
MRDHGAEVEAVTVHASQKYFATASRDNTWCFYDISTGSCLTQVGEASGQDAYTSAAFHPD
GLILGTGTSEGVIKIWDVKSQTRVAKFEGEVGHVGTVTAMSFSENGYFLATAALDGVKLW
DLRKLRNFRTLSPYDPDTPTSSVEFDFSGSYIAVAGSDIRVYQVANVKTEWNLVKTLPDL
SGTGKVTSVKFGADAKYVAVGSMDHNLRVFGLPGDEQMEEAKSESAVQ
NT seq
1767 nt
NT seq
+upstream
nt +downstream
nt
atgatttgcgcaatctccggcgaggtgccggaggacccggtcctgtcgaccaagtcgggg
ctgctcttcgagcggaggctcatccggcgctacatcgaggtcaccaccgtttcccccgct
ctaggttttgcgtcaggcgcccgtccgtgcgcctgggcctttttccctgattttgttttg
gttttggttccccaggaccacgggaagtgcccggtcaccaaggaggagctcgccatggac
gacctcgtgacggtgaagaccaacaagattcctaagcctagacctctgcaagctgcaagt
gtccctggactccttggtatgtttcagaatgagtgggatgctctcatgctgtctaatttt
gctttggagcagcagctacatacagcaagacaagagctcagtcatgcgttataccagcat
gatgctgcttgccgtgttatcgccagactaaagaaggaaagagatgagtctaggacactt
ttggctcaagctgaaaggcagattcctatttcagctgcaggacctgtgcctgtagctgct
gttacaaatgggaaaagaggttttcaccattctaacatgtcaaaacctaacctttttgtc
tgttctgctctaatcctctttcctggatacacagctttggaagatgaagtgggtcctgat
gggaagaagatacgtcctggtattaatcctgtcatcatcgatgaattaacagaatgcaat
tctgtgctctcagcacagcgcaagaaacggcaggtacctccaagtttagcaccaattgat
gcacttgaaagatatactcagatctccagtcatccacttcacaagacgaacaaaccaggg
attttatctattgatattcatcattcaaaggatattattgctactgggggtatcgataca
aacgcagttcttttcgataggccatcgggtcaagtattgtgcactctcactgatcactca
aagaagattacgagtttgaaatttgttccccgggatgagcttttgataacgggatcagca
gataagactgtccgtgtatggcaaggtaatgaagatggaagctatggttgcaggcacaca
atgagagatcatggtgcagaggttgaagctgtcacggtccatgctagtcagaaatacttt
gcaactgcctccagagataacacatggtgcttttatgatatttcaacagggtcttgcctc
acacaggttggcgaggcttctggacaagatgcatacacgtcagcagctttccacccggat
ggtcttatccttggaacaggcacgtcagaaggtgttatcaaaatttgggatgtaaaatct
cagacaagagttgcaaagtttgaaggggaggttgggcatgttggaacagtgactgctatg
tccttctcagaaaatggatatttcctagcgaccgcggcccttgatggtgtgaagctttgg
gatctacggaagctgagaaattttaggaccctctctccatacgatccagacacaccaaca
agttctgtggagtttgactttagtgggagttatatcgctgttgctggttctgatataagg
gtttaccaagtagccaatgtgaagacggaatggaatcttgtcaagacattaccagattta
tccggcacagggaaagtgacatcggtgaagttcggggcagatgccaagtatgtggccgta
ggttccatggaccacaacctgcgcgtattcgggctccctggagatgaacagatggaggag
gcaaaatcagaatcagcggtgcaatga
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