KEGG   Triticum dicoccoides (wild emmer wheat): 119308570
Entry
119308570         CDS       T07278                                 
Name
(RefSeq) THO complex subunit 4A-like
  KO
K12881  THO complex subunit 4
Organism
tdc  Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03013  Nucleocytoplasmic transport
tdc03015  mRNA surveillance pathway
tdc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tdc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119308570
  09122 Translation
   03013 Nucleocytoplasmic transport
    119308570
   03015 mRNA surveillance pathway
    119308570
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tdc03019]
    119308570
   03041 Spliceosome [BR:tdc03041]
    119308570
Messenger RNA biogenesis [BR:tdc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    EJC complex
     119308570
    TREX complex
     119308570
Spliceosome [BR:tdc03041]
 Complex C
  Other components
   EJC/TREX
    119308570
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    119308570
SSDB
Motif
Pfam: RRM_1 FoP_duplication RRM_3
Other DBs
NCBI-GeneID: 119308570
NCBI-ProteinID: XP_037440595
LinkDB
Position
5B:302148592..302151185
AA seq 277 aa
MADALDMSLDDLISKNKSSSQRGRGRRNPASGSGSGSVSGGPAPAGRRFQARAATRAAAA
PYHQFNFPPPAPAAFAYAAQQAHAHAHAQVMAMVAPPTGVETGTKLYISNLDYNVSNEDI
KELFAEVGDLKRYSINYDKSGRSKGTAEVIFSRKSDALAALKRYNNVQLDGKPMKIEVIG
TNIEAPPPPPAIFTLNTPTIGNFIPSYSGGRGRGGDGGRGWPRGRGGFGGRSAAGRGRGR
GDVGRGRGRGGRGSQPVSANDLDADLDKYHSEAMQTS
NT seq 834 nt   +upstreamnt  +downstreamnt
atggcggacgccctggacatgtccctcgacgacctcatctccaagaacaagtcctcctcc
cagcgcggccgtggccgccgcaacccggcctcgggttcgggctcgggctcggtgtcggga
ggacccgcacccgccggccgccgcttccaggctcgcgccgccacccgcgctgccgccgcg
ccctaccaccaattcaacttcccgcccccggcgccggcggcttttgcatatgctgcccag
caggcccatgcccatgcccacgcccaggtgatggccatggtggcgccgccgaccggggtc
gaaacgggcaccaagctgtacatctccaacctcgactacaacgtttccaacgaggacatc
aaggaactctttgctgaggtgggcgatctcaagcggtactccattaactacgacaagagt
gggcgatcaaagggaactgcagaggttatattttcaaggaaatcggatgctctagctgct
ctaaagaggtacaacaatgtgcagcttgatggcaaacctatgaaaattgaggtcattgga
acaaatattgaggcaccaccaccaccacctgctatttttactttgaataccccgacgata
ggaaacttcattccttcctacagtggcggacgtggaaggggcggtgatggtggtcgggga
tggcctcggggcagaggtggattcggcgggcgtagtgctgctgggcgtggtcgagggcgc
ggtgatgttgggcgtgggcgagggaggggagggcgtggcagtcagccagtttctgccaat
gatctagacgcagacttggacaagtaccactcggaagcgatgcagaccagctaa

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