KEGG   Triticum dicoccoides (wild emmer wheat): 119309070
Entry
119309070         CDS       T07278                                 
Name
(RefSeq) THO complex subunit 6-like
  KO
K13175  THO complex subunit 6
Organism
tdc  Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03013  Nucleocytoplasmic transport
tdc03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tdc00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    119309070
  09122 Translation
   03013 Nucleocytoplasmic transport
    119309070
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tdc03019]
    119309070
   03041 Spliceosome [BR:tdc03041]
    119309070
Messenger RNA biogenesis [BR:tdc03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     119309070
Spliceosome [BR:tdc03041]
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    119309070
SSDB
Motif
Pfam: WD40 Beta-prop_WDR5 Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_THOC3 WD40_WDHD1_1st WDR55 EIF3I Beta-prop_WDR3_2nd WD40_Gbeta WD40_CDC20-Fz Beta-prop_WDR41 Beta-prop_EML_2 Beta-prop_WDR36-Utp21_1st Beta-prop_CAF1B_HIR1 Beta-prop_WDR36-Utp21_2nd Beta-prop_TEP1_2nd Beta-prop_ACSF4 Beta-prop_WDR75_1st Beta-prop_EML WD40_MABP1-WDR62_2nd Beta-prop_DCAF4 NBCH_WD40 Beta-prop_TEP1_C Beta-prop_WDR90_POC16_2nd Beta-prop_Nup120_160 Beta-prop_EIPR1 Beta-prop_RIG_2nd Beta-prop_IFT122_1st Beta-prop_DCAF12 Beta-prop_VPS8 Beta-prop_SPT8 Beta-prop_IFT140_1st Ge1_WD40
Other DBs
NCBI-GeneID: 119309070
NCBI-ProteinID: XP_037441061
LinkDB
Position
5B:complement(362069998..362077055)
AA seq 386 aa
MAAATATATVQAQPGLDAREWDEAAYRRGILRERDLSCRTLFRAVFYDQRDEPDPDVLLA
AASSDGSLASFSLSSCIASSASAHAAPQLAAAALVDPVCIVQAHSGPVYDAKFYNDPIQP
LLFSCGDDGHIRGWRWHEMQSCLLPLSLQGDHVEPILDLVNPQHEGPWGARSPIPENNAI
AISKQDGSLFAAAGDACAYCWDVESGKCKMTFKGHTDYLHSIAVREANHQVVTGSEDGTA
RIWDCRSGKCTQTIRPVQNKKFEGSWVGCIAIDASESWLACGTSCGISVWSLLSNECIFN
ADCGAPVQDLLFDKNQILAVGAEPALSRFTINGVVVSQIKCAPPSAFSVSMHSSGMAAVA
GHGGLVDVISGFGSHLCAFRCRGLDR
NT seq 1161 nt   +upstreamnt  +downstreamnt
atggcggcggcgacggcgacggcgacggtgcaagcgcagccaggactcgacgcgcgcgag
tgggacgaggcggcgtaccggcggggcatcctgcgggagcgcgacctctcctgccgcacc
ctcttccgcgccgtcttctacgaccagcgcgacgaacccgacccggacgtcctcctcgcc
gccgcctccagcgacggatccctcgcgtccttctcgctgtcctcctgcatcgcctcctcc
gcctccgcccacgccgccccacagctggctgccgccgcgctggtcgaccccgtctgcatc
gtccaagcgcacagcggccccgtctacgacgccaagttctacaacgatccgattcagccg
ctgctcttcagctgcggggatgacggccacatccggggttggagatggcacgagatgcag
agctgccttctgccactctctctgcaaggggatcatgttgaaccaatacttgacttggtt
aaccctcagcatgaaggcccttggggtgcacggtctccaataccagaaaataatgccatt
gcaattagcaaacaggatggatctcttttcgcggcagcgggtgatgcatgtgcttattgc
tgggatgtggaaagtggaaagtgtaaaatgacctttaaggggcatactgactatttgcat
agtatcgcagttcgtgaggcaaaccaccaggtggtaactggatcagaggatgggacagcc
cgtatctgggattgcagaagtgggaagtgtacgcagacgatacgtccagtacagaacaag
aaatttgagggctcgtgggtcggttgcattgccattgatgcgagtgaaagttggctggct
tgtggtacttcttgtggtatatcagtttggagtcttctttcaaatgagtgcatctttaac
gcagattgtggtgctcctgttcaagatttgttgtttgacaaaaatcaaattttagcggtt
ggcgctgaacctgcgctctcccgtttcacgatcaacggggttgttgtttcgcaaataaag
tgcgctcctccgtcggcattttccgtctccatgcattcatctgggatggcagctgttgct
gggcatggaggtctggtggatgtcatctctggattcgggagccatctttgcgcgtttcgt
tgccgtggcctggataggtaa

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