Triticum dicoccoides (wild emmer wheat): 119309070
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Entry
119309070 CDS
T07278
Name
(RefSeq) THO complex subunit 6-like
KO
K13175
THO complex subunit 6
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03013
Nucleocytoplasmic transport
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119309070
09122 Translation
03013 Nucleocytoplasmic transport
119309070
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119309070
03041 Spliceosome [BR:
tdc03041
]
119309070
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
119309070
Spliceosome [BR:
tdc03041
]
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
119309070
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40
Beta-prop_WDR5
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_THOC3
WD40_WDHD1_1st
WDR55
EIF3I
Beta-prop_WDR3_2nd
WD40_Gbeta
WD40_CDC20-Fz
Beta-prop_WDR41
Beta-prop_EML_2
Beta-prop_WDR36-Utp21_1st
Beta-prop_CAF1B_HIR1
Beta-prop_WDR36-Utp21_2nd
Beta-prop_TEP1_2nd
Beta-prop_ACSF4
Beta-prop_WDR75_1st
Beta-prop_EML
WD40_MABP1-WDR62_2nd
Beta-prop_DCAF4
NBCH_WD40
Beta-prop_TEP1_C
Beta-prop_WDR90_POC16_2nd
Beta-prop_Nup120_160
Beta-prop_EIPR1
Beta-prop_RIG_2nd
Beta-prop_IFT122_1st
Beta-prop_DCAF12
Beta-prop_VPS8
Beta-prop_SPT8
Beta-prop_IFT140_1st
Ge1_WD40
Motif
Other DBs
NCBI-GeneID:
119309070
NCBI-ProteinID:
XP_037441061
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All DBs
Position
5B:complement(362069998..362077055)
Genome browser
AA seq
386 aa
AA seq
DB search
MAAATATATVQAQPGLDAREWDEAAYRRGILRERDLSCRTLFRAVFYDQRDEPDPDVLLA
AASSDGSLASFSLSSCIASSASAHAAPQLAAAALVDPVCIVQAHSGPVYDAKFYNDPIQP
LLFSCGDDGHIRGWRWHEMQSCLLPLSLQGDHVEPILDLVNPQHEGPWGARSPIPENNAI
AISKQDGSLFAAAGDACAYCWDVESGKCKMTFKGHTDYLHSIAVREANHQVVTGSEDGTA
RIWDCRSGKCTQTIRPVQNKKFEGSWVGCIAIDASESWLACGTSCGISVWSLLSNECIFN
ADCGAPVQDLLFDKNQILAVGAEPALSRFTINGVVVSQIKCAPPSAFSVSMHSSGMAAVA
GHGGLVDVISGFGSHLCAFRCRGLDR
NT seq
1161 nt
NT seq
+upstream
nt +downstream
nt
atggcggcggcgacggcgacggcgacggtgcaagcgcagccaggactcgacgcgcgcgag
tgggacgaggcggcgtaccggcggggcatcctgcgggagcgcgacctctcctgccgcacc
ctcttccgcgccgtcttctacgaccagcgcgacgaacccgacccggacgtcctcctcgcc
gccgcctccagcgacggatccctcgcgtccttctcgctgtcctcctgcatcgcctcctcc
gcctccgcccacgccgccccacagctggctgccgccgcgctggtcgaccccgtctgcatc
gtccaagcgcacagcggccccgtctacgacgccaagttctacaacgatccgattcagccg
ctgctcttcagctgcggggatgacggccacatccggggttggagatggcacgagatgcag
agctgccttctgccactctctctgcaaggggatcatgttgaaccaatacttgacttggtt
aaccctcagcatgaaggcccttggggtgcacggtctccaataccagaaaataatgccatt
gcaattagcaaacaggatggatctcttttcgcggcagcgggtgatgcatgtgcttattgc
tgggatgtggaaagtggaaagtgtaaaatgacctttaaggggcatactgactatttgcat
agtatcgcagttcgtgaggcaaaccaccaggtggtaactggatcagaggatgggacagcc
cgtatctgggattgcagaagtgggaagtgtacgcagacgatacgtccagtacagaacaag
aaatttgagggctcgtgggtcggttgcattgccattgatgcgagtgaaagttggctggct
tgtggtacttcttgtggtatatcagtttggagtcttctttcaaatgagtgcatctttaac
gcagattgtggtgctcctgttcaagatttgttgtttgacaaaaatcaaattttagcggtt
ggcgctgaacctgcgctctcccgtttcacgatcaacggggttgttgtttcgcaaataaag
tgcgctcctccgtcggcattttccgtctccatgcattcatctgggatggcagctgttgct
gggcatggaggtctggtggatgtcatctctggattcgggagccatctttgcgcgtttcgt
tgccgtggcctggataggtaa
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