Triticum dicoccoides (wild emmer wheat): 119309196
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Entry
119309196 CDS
T07278
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119309196
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tdc03041
]
119309196
Spliceosome [BR:
tdc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
119309196
Complex C
U5 SnRNP specific factors
119309196
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SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
119309196
NCBI-ProteinID:
XP_037441128
LinkDB
All DBs
Position
5B:complement(369541941..369552895)
Genome browser
AA seq
2358 aa
AA seq
DB search
MWNGVPPPPPMAAAPPPPGTVGAVPAPPPQAAAPPQAGQPLTPAELEAQLVEKARKWHQL
NSKRYGDKRKFGFVEAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFVPHAVY
KLLENMPMPWEQVRDVKILYHITGAITFVNEIPWVVEPIYLAQWGSMWIMMRREKRDRRH
FKRMRFPPFDDEEPPLDYADNLLDVEPLEAIQLELDPDEDGAVYKWFYDHKPLVKTKLIN
GPSYRKWHLSLPIMATLYRLAGQLLSDLIDRNYFYLFDMESFFTAKALNMCIPGGPKFEP
LYRDMEKGDEDWNEFNDINKLIIRQPLRTEYRIAFPHLYNNRPRKVRLCIYHTPMIMYIK
TEDPDLPAFYYDPLINPITSTSKIDRREKKASEEEDEDDFSLPDGVGPLLKETPLYTDTT
AAGISLLFAPKPFNMRSGRTRRAEDIPLVSEWFKEHCPPAYPVKVRVSYQKLLKCYVLNE
LHHRPPKAQKKKHLFRSLQATKFFQTTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHL
DYNFNLKPVKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGL
QYIFSHVGQLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWL
FFLRGIVPLLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMP
EGIKQNKARTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNR
ERIRRGATVDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLE
SRKFSPIPFPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEAL
SRIKRHLLTQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPN
WVKPADSEPPPLLVYKWCQGINNLQDIWDTSDGQCVVMLQTKFEKFFEKIDLTLLNRLLR
LVLDHNIADYVTAKNNVVLSYKDMSHTNSYGLVRGLQFASFVVQYYGLVLDLLLLGLTRA
SEIAGPPQMPNEFLTYIDTKVETRHPIRLYSRYIDKVHIMFRFTHEEARDLIQRYLTEHP
DPNNENMVGYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFVSVY
SKDNPNLLFSMSGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAIAFLRVDDEHM
KVFENRVRQILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQT
RIKIGLNSKMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTHFRSGM
SHEEDQLIPNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIP
RINTLFQKDRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQA
LGGVEGILEHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLW
WSPTINRANVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESVVMDLCQVL
DQELDALEIETVQKETIHPRKSYKMNSSCADVLLFAAHRWQMSKPSLVSESKDVFDQKAS
NKYWIDVQLRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGN
WFPGSKPLLQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQII
WFVDDTNVYRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLA
KWKTAEEVAALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACL
KIEKFGDLILKATEPQMVLYNIYDDWLKSISSYTAFSRLVLILRALHVNNEKAKMLLKPD
KTIVTEPHHIWPSLTDEQWLKVECALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEIA
PPSQQRQQIAEIEKQSRETPQSTAITTRTTNVHGDELIITTTSPYEQAAFASKTDWRVRA
ISATNLYLRVNHIYVNSDDIKETGYTYIMPKNILKKFICIADLRTQVAGFLYGLSPQDNP
QVKEIRCISIPPQHGTHQMVTLPVNLPEHEFLADLEPLGWMHTQPNEAPQLSPQDLTSHA
KILENNKQWDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWGRSNKDNGSNPHGYLPTHYE
KVQMLLSDRFLGFYMVPDNAPWNYNFMGVKHDPLMKYSMKLGTPRDFYHEDHRPTHFLEF
SNIEEGEVAEGDREDTFS
NT seq
7077 nt
NT seq
+upstream
nt +downstream
nt
atgtggaacggcgtgccgccgccgccgccgatggcggctgcgcctcctcctccgggcacg
gtcggcgctgttccggccccgcccccgcaggccgccgcgccgccgcaggcaggccagccg
ctcacgccggcagagctcgaggcgcagctcgtggagaaggcccgcaagtggcaccagctc
aactccaagcgctacggcgacaagcgcaagttcggcttcgtcgaggcgcagaaggaggac
atgccccccgagcacgtgcgaaaaatcatcagggaccatggggacatgtcttcgaagaag
tacagacatgacaagcgtgtttatcttggagcactcaagtttgtacctcatgccgtttac
aaactactggagaatatgccgatgccctgggaacaggttcgggatgttaagatcttgtac
catatcaccggtgccataaccttcgtaaacgagatcccgtgggtagttgagcccatttac
ctggcacagtggggctcaatgtggatcatgatgcgaagggagaagagagataggcggcat
ttcaaaagaatgcgctttcctccatttgatgacgaggaacctccactggattatgctgat
aatttgttggatgttgaaccgttagaggctatacaattggagttggacccagatgaagat
ggagctgtgtataaatggttttatgatcacaagcctctggtgaagactaagcttataaac
ggtcccagttacaggaaatggcatctatctcttcccatcatggcaacactctatcgcctg
gctggtcaacttttgtcagacttgattgaccggaattatttctatttgtttgacatggag
tctttctttactgccaaagcactcaacatgtgtatcccaggaggtccaaaatttgagcca
ctctaccgtgatatggagaaaggggatgaggactggaatgagtttaatgatatcaacaaa
ctcatcatccgtcaaccacttcggactgaatacagaattgcgttcccacacttgtacaat
aacaggccaaggaaagtgagactttgcatatatcatactcctatgataatgtatatcaag
acggaggatccagatttacctgcattttactatgatcctctgataaatccaatcacttca
accagcaagattgatcgccgggagaagaaagcaagtgaagaggaagacgaagacgacttt
agtcttcccgatggagtgggccctcttttgaaagaaactccactctacactgatacgaca
gctgccggcatttcattactctttgccccaaagccttttaacatgagatctggtagaaca
cgccgtgctgaggacattcctcttgtatctgagtggttcaaagagcactgcccaccagca
tatccagttaaagtccgggtgagttaccagaagctgctgaagtgctatgtgcttaatgag
ctacaccataggccgcctaaagcacagaagaagaaacatctgttccgttctctgcaagca
acaaagttctttcaaactacagagcttgactgggcagaagctgggttgcaagtttgcaag
cagggctacaacatgctaaacttgttgattcacaggaagaatcttaactatcttcattta
gactacaatttcaacttgaagcctgtgaagactctcacaacaaaggagagaaagaaatct
cgttttggaaatgcattccacttgtgccgtgagattttgcgacttactaagctagttgtt
gatgcaaacatccaatttcgcttgggaaatgttgatgcctttcagttggccgatggtttg
caatacatattctcccatgttggtcagttgactggtatgtacagatacaagtatcgtctg
atgcggcaaattagaatgtgcaaagatctgaagcacttgatatattatcgtttcaacact
ggtcctgttggaaaagggcctggctgtggattttgggctccaatgtggagagtgtggctg
tttttccttcgtggtattgtacccttgcttgaaaggtggttaggtaatttgctggccagg
cagtttgaaggtcgccattcaaaaggagttgctaaaacagtaaccaagcaacgtgttgag
tcacactttgacctggagcttcgagctgcagttatgcatgatgtccttgatgctatgcca
gagggcatcaagcaaaacaaggcccggactatactacagcatcttagtgaggcatggcgc
tgctggaaggcaaacatcccctggaaggtccctggcctgccggttcctattgaaaatatg
atacttcgttatgtgaagtccaaggctgattggtggacaaatgtcgctcactacaaccgt
gagcgtatccggcgtggtgctacagttgacaagaccgtctgccgcaaaaatcttggaagg
ttaacacgtctgtggctgaaggcagaacaagagaggcagcacaattacttgaaagatggg
ccatatgtaacacctgaagaggcagttgctatttatacaaccacagttcattggcttgaa
tcaagaaagttctcaccgattccttttcctccactctcatacaagcatgataccaaactt
cttatactggctctggaaaggctaaaagagtcttatagtgtggcagtaaggttaaatcaa
ctgcaaagagaggaactgggtttaattgaacaagcatatgataatccgcatgaagccttg
tcaaggataaaacggcatcttcttactcagcgtgcttttaaggaagttggcattgagttt
atggatctgtatagctacttgattccggtatatgaaattgagcctcttgagaaaattact
gatgcataccttgaccaatacttgtggtatgagggggacaagcgccacctcttcccaaac
tgggtaaagcctgctgattcagagccgcctcctctacttgtttacaaatggtgccaaggt
ataaacaatttgcaggacatatgggacacgagcgatgggcagtgtgttgtgatgctgcag
acaaaatttgagaagttctttgaaaaaattgatctgactctgttgaacaggcttctgcgg
ttggtcctggaccataacattgctgattatgtcactgcaaagaacaatgttgtgttgtct
tataaggatatgagtcacacaaattcttatggtcttgttcgaggtcttcagtttgcatct
tttgttgtgcaatactatgggctggtgctggatctcctgcttcttggtttaactcgagct
agtgagattgcagggccaccacagatgccaaatgagttccttacatatattgacacaaaa
gttgagacaaggcatcccatcaggctctattctagatatattgacaaggtgcatataatg
ttccgcttcactcatgaagaagcaagggatttaattcagcgttacttgacagagcatcct
gatcctaacaatgagaacatggtcggttacaataacaagaaatgttggcctagggatgca
agaatgaggctcatgaagcatgatgtaaatcttggaagaagtgtattttgggatatgaag
aaccgcctcccaaggagcattactacattagaatgggagaatggctttgtttctgtgtac
agcaaggataacccaaacctgctctttagcatgtctgggttcgaggtccgtattctgccg
aagatacgtatgactcaggaggcattcagcaacacaaaagatggggtatggaatttacag
aatgagcagacaaaggaaaggacagccattgcatttttgagggttgatgatgaacacatg
aaagtgtttgagaaccgtgtcaggcaaatccttatgtcatcagggtcaacaacatttacc
aagatagttaacaagtggaacactgctctcattggcctcatgacatatttccgtgaagcc
actgttcatacgcaggaactattggatctgcttgtaaaatgtgaaaacaagatccagact
cgtataaagattggcctgaactcaaagatgcctagcaggtttccaccagttatcttttat
acaccgaaggaaattggaggtctgggcatgttgtcaatgggtcacattttgataccacag
agtgatctcaggtatagcaaacagacagatgttggtgtgacgcattttcgaagtggtatg
agtcatgaagaggaccagctaatccctaacttgtatcgctacatccaaccatgggagagt
gagttcattgattcacagcgcgtgtgggctgaatatgctttgaagaggcaggaagcacaa
tcacagaacaggcgcttaacacttgaggatctggaagattcctgggatagaggtatacct
cgtatcaacacacttttccaaaaagaccgccacactttggcatatgacaaaggatggagg
gtcagaacagacttcaagcagtatcaagtgctgaaacaaaacccattctggtggacacat
cagcggcatgatggaaagctatggaacttaaacaactacagaactgatgtcatccaagca
ctcggaggtgtggaaggtatcctggaacataccttatttaaaggaacatatttccctacc
tgggagggtctgttctgggagaaggcttcaggttttgaggaatcaatgaagtacaaaaaa
ctgacaaatgcgcagcgttctgggcttaaccagatccccaatagaagatttaccctttgg
tggtcaccaaccattaatcgtgcaaatgtatatgttggtttccaggttcagctagatctg
acagggatattcatgcatggtaaaattccgaccctgaaaatctctctgatccagattttc
cgtgcacatctttggcagaaggtccatgaaagtgttgttatggatctttgtcaagttctg
gatcaggagttggatgcgttggagattgagacagtacagaaagagacaatacatcccagg
aagagttacaagatgaacagttcctgtgcagatgtcctcctttttgctgcacacaggtgg
cagatgtctaaaccaagcttagtttctgagtcaaaggatgtcttcgaccagaaagcaagt
aacaagtattggattgatgtgcaactacgatggggagactatgactcacatgacatagaa
cgttacacaagggctaaatttatggattatacaacagataatatgtccatctacccttct
ccgactggggtgatgattggacttgatctagcatataatttgcactctgctttcggtaac
tggttccccgggtcaaagcctctcctccagcaagcaatgaacaagatcatgaagtcaaat
cctgccctgtacgtgctgagggagcgaataaggaagggtctccagttgtattcatctgaa
cccactgagccatatctgtcttcacagaactatggagagatattcagcaaccaaatcata
tggtttgtggatgacacaaatgtctatcgtgttaccattcacaaaaccttcgagggtaac
ctgaccaccaaaccaattaatggtgcaatctttattttcaatccaaggactggtcaactc
tttctgaaggtcatccatacaagtgtatgggcaggacaaaagcgtctagggcagctggcc
aagtggaaaacagctgaggaggttgctgccttagttcgatctcttcctgtggaagagcag
ccaaagcaaattattgtgacaaggaagggtatgttggatccgttggaagtccatctgctt
gacttccctaacattgttattaagggtagtgagttgcagctgccattccaagcttgcttg
aagattgagaaattcggtgatcttattctcaaggctacagaacctcagatggttctttat
aacatatacgatgattggttgaaaagtatctcatcttacactgcattctctcgtcttgtg
cttatattacgagcactacatgtcaataatgagaaggctaagatgttgctgaagcctgac
aagacaattgttacggaaccacatcatatctggccaagtttgactgatgagcagtggctc
aaggtcgaatgtgcgctcagggatctcattctttctgattatgcaaagaaaaacaacgtt
aatacctctgcacttacacaatctgagattcgtgatataatacttggtgctgaaatagcc
ccaccatcacagcagaggcaacagatagctgagattgagaaacagtcccgagagacacct
cagtcaactgcaattacaacaaggacaactaatgtgcatggcgatgaactcattatcacg
acaaccagtccatacgagcaagcagcatttgcgtcgaaaacagactggcgtgtcagggcc
atctctgctacaaacttatatctccgtgtcaaccacatttatgttaactcagatgatata
aaggagactggctatacttacatcatgcccaagaatatattgaagaagtttatatgcata
gcagatctacggacacaggttgcaggtttcctgtatggactgagtccacaggataatccc
caagtcaaggagattagatgcatatccattcccccacagcatggaactcaccagatggtg
actctcccagtgaatctaccagagcatgagttcctcgcggacttggagccattgggatgg
atgcatacccagccgaatgaagctcctcagctatcgcctcaggacttgacatcgcatgct
aagattttggagaacaacaagcagtgggatggtgagaagtgcatcattttgacatgcagc
tttaccccaggatcgtgctcactgaccgcatacaaattgacaccaagcggttatgagtgg
ggccgtagcaacaaggacaatgggagcaacccacatggttatctcccaactcactacgag
aaggtccagatgcttctcagtgaccgcttccttgggttctacatggttccggacaacgcg
ccctggaactacaacttcatgggagtcaagcatgacccattgatgaagtacagcatgaag
ctggggacgccccgagacttctaccacgaggaccacaggccgacacacttcctggagttc
agcaacattgaggagggcgaggttgctgagggggacagggaggacaccttctcgtag
DBGET
integrated database retrieval system
