Triticum dicoccoides (wild emmer wheat): 119315124
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Entry
119315124 CDS
T07278
Name
(RefSeq) spliceosome-associated protein 130 A-like
KO
K12830
splicing factor 3B subunit 3
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119315124
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdc03021
]
119315124
03041 Spliceosome [BR:
tdc03041
]
119315124
03036 Chromosome and associated proteins [BR:
tdc03036
]
119315124
Transcription machinery [BR:
tdc03021
]
Eukaryotic type
RNA polymerase II system
Coactivators
SAGA/TFTC/STAGA complex
119315124
Spliceosome [BR:
tdc03041
]
Complex A
U2 snRNP components
U2 snRNP specific factors
119315124
Complex B
119315124
Complex C
U2 SnRNP specific factors
119315124
Chromosome and associated proteins [BR:
tdc03036
]
Eukaryotic type
Histone modification proteins
HAT complexes
STAGA complex
119315124
TFTC complex
119315124
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Beta-prop_RSE1_1st
Beta-prop_RSE1_2nd
CPSF_A
Motif
Other DBs
NCBI-GeneID:
119315124
NCBI-ProteinID:
XP_037445699
LinkDB
All DBs
Position
6A:80665905..80671898
Genome browser
AA seq
1227 aa
AA seq
DB search
MYLYSLTLQRATGAVCAVIGSFSGRDSKKSNAAGSSTQEIAVARGGTLDLLRPDPETGRL
RTLLSVDVFGAIRSLAQFRLTGATKDYLVVGSDSGRLVILEYSPDRNRFDKVHQETFGKS
GCRRIVPGQLLSVDPKGRALCIAALEKQKLVYVLNRDASARLTISSPLEAHKSHTLTFAL
TALDCGFDNPVFGAIELEYGDSDRDPTGQAASHAQKLLTFYELDLGLNHVSRKVSEPIDN
GANMLVTVPGGADGPSGLLVCCDNFILYRNQGHPEVRAVIPRRVDLPAERGVLIVAAATH
RQKSLFFFLLQTEYGDIFKVDLDHHGDTVSELRIKYFDTIPVASAICVLRSGFLFAASEF
GNHALYQFRDIGRDVDVESSSATLMETEEGFQPVFFQPRALKNLVRIDEIESLMPIMDMR
IANLFDEETPQVYTACGRGSRSTLRILRPGLAISEMARSMLPAEPIAVWTVKKNINDMFD
AYIVVSFANVTLVLSIGETIEEVSDSQFLDTTHSLAVSLLGEDSLMQVHPNGIRHIREDG
RVNEWRTPGKKTITKVGSNRLQVVIALSGGELIYFEMDMTGQLMEVEKQDMSGDVACLAI
APVPEGRQRSRFLAVGSYDNTIRILSLDPDDCLQPLSVQSVSSAPESLLFLEVQASVGGE
DGADYPANLFLNAGLQNGVLFRTNVDMVTGQLSDTRSRFLGLRPPKLFPCIVSHRQAMLC
LSSRPWLGYIHQGHFLLTPLSCDTLESAASFSSDQCSEGVVAVAGDALRIFTIERLGETF
NETSIPLRYTPRKFVILPKKKYLAVIESDKGAFSAEQREAAKKECLEAAGAAENGNGNGD
QMENGDGQEDGEESNALPDEQYGYPKAESEKWASCIRILDPRSRDTTCLLELQDNEAAVS
ICTVNFHDKEHGTLLAVGTTKGLQFWPKRSLASGFIHIYKFVNEGKSLELLHKTQVEEVP
LSLCQFQGRLLAGVGSVLRLYDLGKRKLLRKCENKLFPRTIVSIHTYRDRIYVGDMQESF
HYCKYRRDENQLYIFADDSVPRWLTAANHIDFDTMAGADKFGNIYFARLPQDLSDEIEED
PTGGKIKWEQGKLNGAPNKVEEIVQFHVGDVVTCLQKASLIPGGGECLIYGTVMGSVGAL
LAFTSREDVDFFSHLEMHLRQEHPPLCGRDHMAYRSAYFPVKDVIDGDLCEQYPALPADM
QRKIADELDRTPGEILKKLEDIRNKII
NT seq
3684 nt
NT seq
+upstream
nt +downstream
nt
atgtacctctacagcctgacgctgcagcgggcgacgggcgccgtgtgcgccgtcatcggc
agcttcagcggccgcgactcgaagaagtcgaacgccgcgggctcctccacgcaggagatc
gccgtcgcccgcggcggcacgctcgacctcctccgcccggaccccgagacgggccgcctc
cgcacgctcctctccgtcgacgtcttcggcgccatccgctcgctcgcccagttccgcctc
acgggggccaccaaggactacctcgtcgtcggctccgactccggccgcctcgtcatcctc
gagtactcccccgaccgcaaccgcttcgacaaggtccaccaggagaccttcggcaagtcc
ggctgccgccgcatcgtgcccggccagctcctctccgtcgaccccaagggccgggcgctc
tgcatcgccgccctcgagaagcagaagctcgtctacgtcctcaaccgcgacgcctccgcc
cgcctcaccatctcctccccgcttgaggcgcacaagtcccacacgctcaccttcgccctc
acggccctcgactgcggatttgacaaccctgtctttggtgccatcgagcttgagtacggt
gactctgaccgtgaccccacagggcaggctgctagccacgcgcagaagctcctcaccttc
tacgagctcgacctggggctcaatcatgtttcccgcaaggtctccgagccgattgacaat
ggtgctaatatgctagtgacagtgcctggtggtgctgatgggcctagcgggcttcttgtt
tgctgtgacaacttcatcctgtaccggaaccagggccacccggaggtgcgtgctgtcatt
ccacgccgtgttgacctcccggctgagcgtggcgtcctcatagttgctgctgcgacgcac
aggcagaagagcctgttcttcttcttactacagactgagtatggtgatatctttaaggtt
gacctggaccaccatggtgatactgttagtgagctcaggatcaaatattttgacaccata
cctgtggcatctgctatctgtgtgctgcggtcaggtttcctctttgctgcttctgagttt
ggcaaccacgcactttaccaattccgtgatattggccgggatgtggatgttgagtcctcc
tctgcgacactgatggagacagaggaggggttccagccagtgttctttcagccgagggca
ctcaagaaccttgtccggattgatgagatagagagcctcatgccaatcatggatatgcgt
attgcaaatttattcgatgaggaaacaccccaggtgtacacagcttgcggccgtggctca
cgctccacgctgcggatccttagacctggccttgccatcagcgagatggcccgatcaatg
ctgcctgctgagcccattgctgtttggactgtcaagaagaatatcaacgacatgtttgac
gcctacattgttgtgtcctttgctaatgtcacacttgtgctctcaattggagagaccatt
gaagaagtcagcgacagccagttcctggacaccactcactcactggcagtttcgctcctt
ggtgaggactctctcatgcaggtccacccgaacggtatcaggcatatcagggaggatggc
cgtgtcaatgagtggaggacgcctgggaagaaaactatcaccaaggttggatcaaaccgg
ctccaggtggtaattgccctcagtggtggagagctcatctattttgagatggatatgaca
ggtcagctcatggaggtggagaagcaggacatgtctggtgatgtcgcgtgcctggccatt
gctccggttcctgaagggaggcaaaggtcccgttttctcgcagttggctcctatgataac
accatcaggatactctcccttgaccccgatgactgcttgcagcctcttagtgtacaaagt
gtgtcctcggctccggaatctctcttgttcttagaagtacaggcatcagttggtggcgag
gatggtgcagattatccagccaaccttttccttaatgctggtttgcagaatggtgtcctt
ttccgaaccaatgttgacatggtcactggccagctatcagacacacggtctcgattcctt
ggtctgagacctccaaagctgtttccctgcatagttagccaccgacaagcaatgctttgc
ctgtccagccgcccctggcttggctatatacatcaaggtcacttcctcttgacaccactc
tcatgcgacacacttgagtctgctgcgtcgttctcttctgaccagtgctcagaaggtgtt
gttgctgttgctggagacgctctgcgtattttcaccatcgaacgtctgggagagacattc
aatgagacatctatccctctgcgttacaccccgaggaaatttgtgattctaccaaaaaag
aaataccttgcagtcattgagagtgacaagggtgcatttagcgcagaacagcgagaagct
gctaagaaggagtgccttgaggctgctggtgcggcggaaaatggaaatggtaatggggat
caaatggagaatggtgatggtcaagaagatggtgaggagagtaacgcacttcctgatgaa
caatatggttacccaaaggcagaatcagaaaagtgggcttcctgcattagaattcttgat
ccgaggagcagggacacaacttgtcttctggaattgcaggacaatgaggcagctgtgagt
atttgcaccgtgaatttccatgataaggagcatggtactcttctggctgttggtactacc
aagggattgcagttctggccaaagaggagcctcgcttctggtttcatccacatatacaag
tttgtcaatgaagggaagtcgcttgaacttcttcacaaaacacaagtggaggaagtgcct
ctttctttgtgccagtttcagggacggttgcttgcaggtgttggttcagtgctcaggtta
tatgatcttgggaagagaaagttgctcagaaaatgtgaaaacaagcttttcccaaggaca
atagtgtctattcatacttaccgtgataggatctatgttggtgatatgcaagagtcgttt
cattattgcaagtatagacgggacgaaaaccagctgtatatcttcgctgatgacagtgtt
cctagatggcttacagcagcaaatcacatagatttcgacactatggcaggagccgacaag
tttgggaacatatattttgctcgtcttccccaggatctctcagatgaaattgaggaagac
ccaactggaggcaagattaaatgggagcaagggaagttaaatggtgctccaaacaaagtg
gaggagattgtgcagtttcatgttggtgatgttgtgacatgtttgcagaaggcttctttg
atacctggcggaggtgaatgccttatttatgggactgtaatgggtagtgtgggagcactg
cttgcattcacctcaagggaagatgttgacttcttctctcacttggagatgcatctccgc
caggagcatccaccattatgtggaagagatcacatggcctacagatctgcttatttccca
gtgaaggatgtaattgatggcgatctctgtgagcagtatccagccctcccagctgatatg
cagaggaagattgccgatgagctcgaccgaactccaggtgaaatcctgaagaagctggaa
gacatcagaaacaaaatcatctag
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