Triticum dicoccoides (wild emmer wheat): 119316649
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Entry
119316649 CDS
T07278
Name
(RefSeq) protein CLP1 homolog
KO
K14399
polyribonucleotide 5'-hydroxyl-kinase [EC:
2.7.1.78
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119316649
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119316649
Enzymes [BR:
tdc01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.1 Phosphotransferases with an alcohol group as acceptor
2.7.1.78 polynucleotide 5'-hydroxyl-kinase
119316649
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119316649
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CLP1_P
Clp1
CLP1_N
nSTAND3
AAA_22
ATP_bind_1
ABC_tran
CbiA
SRPRB
AAA_10
AAA_29
MMR_HSR1
AAA_24
GTP_EFTU
Motif
Other DBs
NCBI-GeneID:
119316649
NCBI-ProteinID:
XP_037446902
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All DBs
Position
6A:complement(219453775..219458718)
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AA seq
438 aa
AA seq
DB search
MAATGAAAPAPAAVQPLRQFKLDPQSELRVEVLPDATLRVRLVSGTAEIFGTELPPEGWL
TIPPRSKIAIFTWHGATVELDGVSESEYTSDETPMVIYVNIHAILDARRARARAAQGGDL
EASQGPRVIVVGPTDSGKSTLCKMLLSWAAKLGWKPTYVDLDIGQGSITIPGCISATPIE
KPIDIVDGIPLEMPLAYFYGHPNPSINPDVYKALMRELAQTLETQFSGNAESRAAGMVIN
TMGWVEGLGYELLLNAIEIFKANVVLVLGQEKLWKMLKDAVQSKPNIDVVKLHKSEGVVL
RNSKYRQKTRSFRIKEYFYGIANDLAPHSNVVNFSDVSVFRIGSGHQAPRSALPIGAEPV
ADPTRLVAVNISTDMVHTVLAVSYAKEPDEIISSNVAGFIHVTDVDIQRKKLTYIAPCPG
DLPSRLLIASSLTWYEQA
NT seq
1317 nt
NT seq
+upstream
nt +downstream
nt
atggccgccaccggcgctgccgcgcccgcgcccgcggccgtgcagccgctgcggcagttc
aagctcgacccgcagagcgagctccgcgtggaggtgctcccggacgcgaccctccgcgtg
cgcctcgtctccggcacggcggagatcttcggcaccgagctcccccccgagggctggctc
accatcccgccccgctccaagatcgccattttcacgtggcacggcgcgacggtggagctg
gacggggtcagcgagagcgagtacacgtccgacgagacgccgatggtgatttatgtgaac
atacatgcgattctcgacgcacggagggcgagggcgagggcagcgcagggaggcgacttg
gaggcctcacagggacctagagtgattgttgtggggccaactgattctggaaaaagcact
ctgtgcaaaatgctccttagctgggctgccaaactgggatggaagcctacatatgtggat
ttagatattggccagggttcgataaccatacctggatgtatttctgctacgccaattgag
aagcctatcgatatagttgatgggattcctttggagatgccgcttgcatacttttatggc
catccaaatccaagtattaatccagatgtttacaaagcactcatgagagagctagctcaa
acattagagacacagttctctgggaatgctgaatctagggcggctggtatggttattaac
acaatggggtgggttgaaggccttggctatgagttacttcttaatgcaattgaaatcttc
aaggctaatgtagtgctggtattgggacaggagaagttatggaagatgttaaaagatgca
gtacaaagtaagcccaatatcgatgtcgtaaaacttcataaatcggagggtgttgtccta
aggaattcaaaatatcgtcaaaagactaggagctttcgtatcaaggagtacttttacggg
attgcaaacgatctggcaccacattcaaatgtagtcaacttcagtgacgtttctgttttc
agaattggtagtggacatcaagctccacggtcagctttaccaattggtgcagagcctgtg
gcagatcctactcggcttgttgctgtcaacatcagcactgatatggtccacacagtgctt
gctgtttcttatgcgaaggaacctgatgaaataatttcgagcaacgttgcaggattcatc
catgtcacagatgttgacatccaaaggaagaagctgacgtacatcgcgccttgcccagga
gacctgccaagcaggctgttaatcgctagctccctgacatggtacgagcaggcttga
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