Triticum dicoccoides (wild emmer wheat): 119317704
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Entry
119317704 CDS
T07278
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119317704
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119317704
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119317704
mRNA degradation factors
5'-3' decay
Decapping complex
119317704
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_TEP1_C
DUF445
Motif
Other DBs
NCBI-GeneID:
119317704
NCBI-ProteinID:
XP_037448094
LinkDB
All DBs
Position
6A:complement(531039115..531048014)
Genome browser
AA seq
1357 aa
AA seq
DB search
MASPAGNPNPNPGNPNPPFEMAMLFRPPPNPAPTAAPMFPGAAGPPPHSGPYSYPPAXXP
FHLRPYLHYPQDPQPPMPRPVIPFPMPNPNANPNPGANPMAAGGANPGARLMQLLGSSGS
GHLESAVSMPPPSSEFAAAQPSPLPAMPSAPPARMLSSTSSKVPRGRLLGGGDKAVHNVD
SRLPGEAQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNINTALRSL
LRGHTQRVTDMAFFAEDVHRLASASVDGRIYVWRIDEGPDAENKPQITGKIEVAIQIVGD
AVAYHPRICWHSHKQELLFVGIRNCVLRIDTTKVGRGRDFSVEEPIKCHLDELIDGVRLV
GRHDGDVTDLSISQWMTTRLASGSNDGTVKIWDDRKLAPLSILKPHDGQAVYSVAFLTAP
ERPHHINLITAGPLNREIKIWASTNEEGWLLPSDSETWNCTQTLELVSSLEPKVEEAFFN
QVAVLPQASIILLANAKKNAIYAVHVEYGSDPASTRLDYIADFTVAMPILSLTGTHESQP
DGEQVVQVYCVQTMAIQQYGLELSLCSPPTSDTTSFGRDPAISRVYDTPLEVVGAESSTG
TSFTDSYTIGTSSKQSTFDQTAEFDLKPSAPPLTYTEGDGSAHLQSAPLASNTDLTGSGP
SVGNRDKDQSAFDYSTSRITEPVALTRQDTPMPKPVALARQDTPMPKPVALARQDTPMPK
DNFGKDELRDSHSDVQMLPNPRMMFKVGGNATHLITPSEIISGALSAESNQISKSDGAKI
QDDSISSPRIAEVEAKHVDESKSNHDLELEAVKEAQVVCENSEKDQNSLEQTVEMISERS
VTTDKYSVEESRSPSDRLVPDHTGAAGENVSNKTVEKPGISDSSVSREQSSSYTKDKVFH
PQASGQSSPSTSAFNSTESSHEPVSSAYPPIQSSSEVADMLQQLIAMQKDMQKQLGTIVI
APIAKEGKRIETSLGRTMEKSIKASIDALWARFLEENTKREKAERERMQQMTTLITSSIN
KDLPAMLDKLVKKEVSSLGPVVARAMTHIIEKSLTSIVADAVQKAVGDKVVNQLDKSVTA
KLEATLARQIQMQFHTSVKQTLQDVLRTSFESLLVPAFEQSCKTMFEQVDSAFQKGMSEH
AVAIQQQVEAAHTPLVLTLKETITSASSITQNLTSELLDGNRKILALVTSGNANAQNTNV
LQPNNGPITGPPEVEAPLDPMKELGRLLAEHKFDEAFTVALQRSDVSIVSWLCSQVDLRG
LCTMAPVPLNQGVLLALLQQLAVDIGIETSRKIQWMTDVAMAINPTDQVIAIHVRPIFEQ
VYAKLAHHRSLPTTSPLDNSNLRLLMHVINSVLLSYK
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctccagccggaaaccctaatccgaaccccggcaaccccaatccccccttcgag
atggccatgctcttcaggccgcctcccaaccccgcgccgaccgccgcgcccatgttcccc
ggcgccgccggcccgccgccgcactccggcccctactcctacccccccgcnnnnnctccc
ttccacctccgcccctacctccactacccgcaggatccccagccccccatgccccgcccg
gtcatccccttccccatgcccaacccgaacgcgaaccccaacccgggcgctaaccccatg
gccgccgggggcgccaaccccggcgcccgcctcatgcagctgctcggcagctccgggtcg
ggccacctcgagtccgcggtatctatgcccccgccgtcgtcggagttcgccgccgcgcag
ccgtcgccgctcccggcgatgccatccgcgccgccggcgaggatgctcagcagcaccagc
agcaaggtgccgagaggtcggcttctgggtggcggggacaaggcggtgcacaacgttgac
tcgaggctgcctggggaggcgcagccgccacagctggaggtgacgccgatcaccaagtac
acgtcagacccaggtcttgtgctgggcaggcagatcgctgtaaaccggacgtacatcgtc
tatgggctcaagctggggaacatccgtgtgctaaacatcaacaccgcgcttcggtcactg
ctccgtggccatacacagagggtcacggacatggctttcttcgctgaggacgtccatcgt
ttagcaagcgcaagtgtggatggacggatatacgtgtggaggattgatgaggggcccgat
gcagaaaataaaccacaaattacaggaaagatagaagttgccatacaaattgtaggtgat
gctgtagcttaccatccaaggatatgttggcactctcataagcaagaacttctgtttgtt
ggaatcagaaactgtgtcttaagaatagacacaactaaagttggaaggggaagagacttt
agtgttgaagaacctatcaaatgtcatcttgatgagcttattgatggtgtacgcttggtt
ggtaggcatgatggtgatgtgacagatttgtccatatctcagtggatgactacccgactg
gcttcaggatcaaatgatggcacggtaaagatttgggacgatcgcaagttagcacctcta
tcgattctaaagccacatgatggtcaagctgtttactcagttgcctttcttacagcacct
gagcgcccgcatcatataaatctcatcactgctggtcctctaaaccgagaaattaaaatt
tgggcttctactaatgaagaaggttggttgttgccaagcgactctgagacttggaattgc
acgcagactctggaacttgttagttctctggaacctaaagtcgaggaggcatttttcaac
caagtcgcagtgctgcctcaagcaagcattatcttacttgcgaatgcgaagaagaatgct
atttacgctgtgcatgttgagtatggctcagaccccgcttctacccgcttggattatatc
gcagattttacagtcgcgatgcctattttaagtcttactggcacacatgaaagccaacct
gatggtgagcaggtagttcaagtctattgtgtccaaacaatggccatccagcagtatggg
ctggagttatcactttgttcgcctcctacatctgacactacctcatttggaagagaccct
gctatttcacgtgtttatgatacacctctggaagtggtaggagcagagtcatccacggga
actagctttacagattcttataccatcggtacttcgagtaaacaatcaacttttgatcag
actgcagagtttgatcttaagccatcagctccaccacttacatacacagaaggtgatggt
tctgcgcatcttcagtctgcccctcttgcatcaaacactgatcttactggatcaggacca
tcagtaggcaaccgtgacaaagaccaatcagcttttgattattcgacaagccgaatcact
gagccagttgccttgactaggcaagatacacccatgccaaaaccagttgccctcgctagg
caagatacacccatgccaaaaccagttgcccttgctaggcaagatacacccatgccaaag
gacaattttggaaaggatgaattaagagacagccacagtgatgttcagatgctcccaaat
cctcgcatgatgtttaaggtaggaggaaatgccactcatctcataactccatctgaaatt
atatcaggtgctctgtctgctgaaagcaatcagatctctaaatctgatggcgcaaaaatc
caggatgactctattagtagccctcggattgcagaagtggaagcaaaacatgtcgatgag
agtaaatctaatcatgatttggaacttgaagctgtcaaggaagctcaagttgtctgtgag
aactcagagaaagatcaaaattcgttggagcaaactgttgaaatgatcagtgagcgttca
gtaacaactgataagtatagcgtggaagaatcacggtcaccatctgatagactggtccct
gaccatactggtgctgctggagaaaatgtttcaaacaaaaccgtagaaaaacctggcata
agtgactcctctgtgtctagggagcaatcatcttcatatacaaaggacaaggtttttcat
cctcaagcatctggtcagtcatcaccttctacaagtgcatttaactcaactgagtcttca
catgaacctgtcagcagtgcataccctcctattcaatcctcttcagaagttgccgatatg
ctgcaacagctaatagccatgcagaaggatatgcagaagcagctaggtactatcgttatt
gctcccattgcgaaggaaggcaaaagaattgaaacatcactaggccgtacaatggaaaaa
tctatcaaggctagcattgatgccttgtgggctcgtttcctggaggagaacacaaaacgt
gagaaggctgaaagggagcgaatgcagcaaatgaccactctcatcacaagctcaataaac
aaggaccttcctgctatgttggataagttagtaaagaaagaagtttcttcacttggacct
gttgttgcacgggcaatgacacatattattgagaagtccttaacttctatagttgctgat
gcagttcagaaagcggtgggtgacaaggtggtgaatcagctggacaaatctgttactgca
aaacttgaagctacacttgctaggcaaatccaaatgcaatttcatacatctgtaaaacag
actcttcaggatgttttacgcactagctttgaatcattgcttgttccagcatttgaacaa
tcatgcaagacaatgtttgagcaagtagacagtgcattccagaaaggaatgtctgagcat
gctgttgctattcagcagcaggttgaggcagcacatactccattggtgcttactttaaag
gaaactatcacttctgcgtcctcaatcacccagaatctcacatcagagttacttgatggg
aatcgcaaaattttggcgctggttacatctggcaatgccaatgcgcaaaatacaaatgtt
ctgcagcccaacaatggtcctatcactggcccgccagaggtcgaggcaccattagacccg
atgaaggagctgggaagactgctagctgaacacaaatttgacgaggcttttacagtagca
cttcaaagaagtgacgtgtcaattgtgtcttggttatgctctcaggttgatttgcgtgga
ttatgtacaatggccccagtccctctgaaccagggagtcctcctagccctactccagcag
ctagcagttgatattggcatcgagacatcccggaaaattcagtggatgacagatgttgcc
atggcgatcaatccgacagaccaagtcatcgccatacatgtgaggcccatcttcgagcaa
gtctacgccaaattggctcaccaccggtcgctccccaccaccagtccattggataacagc
aatcttcgcttgcttatgcatgtcatcaactcagttctgcttagctacaagtga
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