Triticum dicoccoides (wild emmer wheat): 119320242
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Entry
119320242 CDS
T07278
Name
(RefSeq) vacuolar protein sorting-associated protein 8 homolog
KO
K20178
vacuolar protein sorting-associated protein 8
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
119320242
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tdc04131
]
119320242
Membrane trafficking [BR:
tdc04131
]
Endosome - Lysosome transport
Tethering complex
CORVET complex
119320242
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps8
Beta-prop_VPS8
VPS8_N
Beta-prop_EML_2
Beta-prop_EML
Beta-prop_HPS5
WD40_CDC20-Fz
ANAPC4_WD40
TPR_VPS8_2
WD40_WDHD1_1st
WDR55
Clathrin
TPR_Vps41
WD40_Prp19
WD40
Beta-prop_TEP1_2nd
Beta-prop_IFT140_1st
zf-RING_2
zf_RING_Vps8
Motif
Other DBs
NCBI-GeneID:
119320242
NCBI-ProteinID:
XP_037450268
LinkDB
All DBs
Position
6B:complement(101022428..101036429)
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AA seq
1921 aa
AA seq
DB search
MPSSSPAMATQPPPRPPAQELDLDAFLPYSPASSSASDADADHRRAVDDLLLLLSSSDSE
GDDEPTRTPATNLKPLTSIKAPPPPPKPSPPSPLPSPSASPGRSTSASPSTTLSSLVSRT
FSSNAASSSTSSARPLPSLFRGVRPSPKPGAALAAAAAASRAVLTPHAAAIKSRRTASAP
IDKLLDEGSGSEASEGILSTGNLEAEEVAEKVSEEVVARVTEEAVGGSGDEELEEDKHGE
VGTEENSEPSELVDLGDVDSVAVDNVNEQEQLGGENLAETYQAGSQIGLVDEENSDEQLS
DGNLAEAGEIVDQDGSVSEEKTDDGLEVELSGTDLEEQLESESIIDKVIEERLEISRMAE
KNAERRPKVPMKPLERAEELEKRQASFGQHWEEGAAAQPMHLEGIGKGQPAIGYMQIEVD
NPITRAMSSPSFRQDHGSPQVLAVHRSYIAMGMSTGSVIIVPSKYSIHQADDTDAKMLFF
WNQGEKTQSPVTAMCFNPQGDLLLVGYGDGHMTIWDVQKATAAKVIYGEHTGAVVHVCFI
RQSKAITGDSKGLVLLHTFSIIPVINRLTVKGTQRLFDGNTGIVLSACPLLADESFGSGN
SSTQVNLPTSSSGGLGSMMGGVVGVDSGWKFFNEGSSPLEDGVTVMFIMHQHALVVRLRT
NIDHVEHIETFSRPEGAREGSIAYAAWKYTSSSTDSSPIDEERVSWLALAWDRQVQVAKF
VKSKMIRHKDWKLDSAAVGVAWLNDQMLAVLNLKGQLCLFSKDGSELRRTIFTLDGFVFD
DSILYHTHFSNRFGNPERHFNNSVAVRGATVYILGPSFLTVSRLLPWKERIEALKMAGDW
MGALDMAMKLYDGHTQGVVDLPRTVDSIRGAIMPYLVELLLSYIGYVFEYISIALSNHTG
KGGAADGLIDADRSLLTQREEQYARVGGVAVEFCVHIGRNDILFDTVFSKFVAAQSGGIF
LEVLEPYILKDMLGSLPPEIMQALVEHYSGKGWLQRVEQCILHMDISSLDFNQVVRLCRE
HGLYGALIYLFNQGLNDFRTPLEELLSVIQNATRKDATSTCYRMLVYLKYCFQGLAFPPG
HGIIPRAQLHAVRKELLQFMLEDSKMLTSEVFKGFSSSSGKCPNICYLLWMDTEATLEVV
KCAFAQENLEPTSSTLDSSVSKDEEDTDIESPDSQNILLQSVVDTIIRIAGLENEAIHSV
VVGTAESEESELWPSVSDFGHIIEFVSFFVSHKRANASQRVLKHILKYLTSSTTSYDDKK
MPPQKEVLQLFNVVSQTDWNSDYVLNLCLDAHFHQACGMIYTARNQNLAALDSYMKDTME
PYHAFIFINKKLLQLASDEALSFRSTVISRFAELVNLSRECAFVLVIDHFHDEIQQILAE
LHSDHRSLFLFLKTAIEVHLSGKLDFSELTAINYEIVESLYSGELEDYLQRLSNLPKLFD
RNPISMTDKLVELYLELLCQYEPRSVLKFLETFDSYRLERCLLLCLDYGVTDAAAFLQER
VGDVASALELVLAGLDEKVNQFIASVENVFSRTSSKSISEIEQPDIVLNMSEARPVLDVL
RSSIGLCQRNSQRLDPEESQLLWFQLVDSFSDPLKKLYGSKVVNEKGCWSVGGETTNGHP
AGKGFSQKMVNSAYQRCLNTLRRVFSQFVGEIIEAMAGYIPLPAIMAKLLSDNGSQEFGD
FKLVIHRMLSMYLYEKRILETAKSVIEDDSFYTLSLLKRGVCHGFAPQTFVCCVCNCSLS
KEGAISAVRVFSCGHATHLHCESEQSKSSNKDFKDGCPVCLSMSDTQARNKSPIIAENGL
SKYPVVEHEVPYGVHHNHETDHVERSRGLHQMSRFEILNNLQKGQKSFHIETVPPLKLSP
PAIYHEKIQKKVSLVGESSRQSVRSEKPQKIWHMKEPKSKKSGNWLPPKSSIFSSDKNQV
W
NT seq
5766 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcgtcgtcgccggcgatggcaacccagccaccgccgcggccaccggctcaggag
ctcgacctcgacgccttcctcccgtattctcccgcctcctcctcagcctccgacgccgac
gccgatcaccgccgcgccgtcgacgacctgctgctcctcctctcctcctccgactccgaa
ggagacgacgagccaacccgtacgcccgccaccaacctcaaacccctaaccagtatcaaa
gccccaccgccgccccctaaaccttctcccccatctcctctgccatcgccttccgcttcg
cccgggagatccacatccgcatcgccgtcgacgacgctctcctccctcgtctcgagaacc
ttctcgagcaacgctgcttcctcgtccacctcctcggcgaggccgctcccctcgctcttc
cggggtgtccgccccagccccaagcccggcgccgccctggccgcggcggcagccgcgtcc
cgcgccgttctcaccccgcacgccgctgcaattaagtcgcggcgcaccgcctccgcgccc
atcgataagctcctcgacgagggctccggctccgaagcctccgaggggatcctttccact
ggaaatctcgaagcagaggaagtagctgagaaggtcagtgaggaagtggttgctagggtg
accgaggaagctgtcggtgggagtggggatgaagaattggaagaggacaagcacggggaa
gtggggactgaagagaattccgagccctccgaattggtggacctaggcgatgtcgattct
gttgctgtggataatgtcaatgagcaggagcaacttgggggcgagaatttggcagaaaca
tatcaagctgggagtcaaattgggcttgttgatgaagaaaatagtgatgagcaacttagt
gacggaaatttagcggaagctggtgagattgtggatcaagatgggtcagtttccgaggaa
aagaccgatgatggtctggaagttgaactttctggcactgatttggaagagcaactggaa
tctgagagcatcattgataaggtgattgaagagaggttggagatcagcaggatggctgaa
aaaaatgcggagagaaggccgaaggtaccgatgaaaccattggagcgggctgaggagctt
gagaagagacaggcctcatttgggcagcactgggaggagggagcagcagcgcaacccatg
cacctggaggggattgggaaggggcaaccagctattggttacatgcagattgaggtggac
aacccaataactcgtgccatgtcatctccgtcttttagacaggaccatggctctccccag
gtcttagcagtacataggagctatattgccatgggcatgtccactggatctgttatcatc
gtcccaagcaaatactccatccatcaagctgatgatacagatgcaaagatgctgttcttt
tggaaccaaggtgagaaaacccaatcaccagtgactgccatgtgctttaacccgcaaggg
gatcttctgctagtaggatatggtgatggtcatatgacaatttgggatgtacagaaggct
actgcagcaaaagtcatatatggtgaacatacaggagctgtagtgcatgtttgttttatc
cgccaatctaaagccatcactggtgattcaaaagggcttgttcttctgcacacattctct
attatccctgtcattaatcgcttgactgttaagggaactcagcgcctttttgatggaaac
actggaatcgtgctctcagcctgtcctcttctagcggatgaatcctttggttctggcaac
tcatctacgcaggtcaacctaccaacttcctccagtggtggtcttgggagcatgatgggt
ggtgtagttggagtagattctggatggaagtttttcaatgaaggctcttctccattggag
gatggtgttacagtcatgttcattatgcatcaacatgctcttgtggttagactccgtacc
aacattgaccatgttgaacatattgagaccttttctagaccagaaggagcacgcgaaggg
tcaattgcttatgctgcatggaaatacacatcgtcctccactgattcgtcgccaattgat
gaagagcgagtatcttggcttgcgcttgcatgggaccgtcaagtacaagttgcaaaattt
gttaaatcaaagatgatcagacataaggactggaagcttgatagtgccgctgttggcgtt
gcctggttaaatgatcagatgttagctgtccttaacttgaaagggcagctctgtttgttc
tcaaaagatggcagtgagcttcgcaggactatctttactcttgatggttttgtcttcgat
gacagcatactgtaccatacacatttttctaacaggtttggcaaccctgagaggcatttt
aacaactcagtagcagtaagaggtgctacagtatatattcttggcccaagctttcttaca
gtttcgcggcttcttccatggaaagagcggattgaagcactaaagatggctggtgattgg
atgggtgcactggacatggcaatgaagctttatgacggtcacacacagggtgttgttgat
cttccgagaacagttgattctataaggggagccataatgccgtatttagtagagttgctg
ctatcatatataggttatgtctttgaatatatttcaattgcattgtcaaatcatactgga
aaggggggagcagcagatggcctgatagacgccgatagatccctgctgacacagagagaa
gaacaatatgctcgtgtaggaggggttgcagtcgagttttgtgttcacattggacggaat
gacatcttgtttgatacagtcttctctaagtttgttgctgcccaaagtggaggtatattt
ctggaggtactagagccatatatattgaaagatatgctgggttctttaccccctgagatc
atgcaagctctggtggagcattatagtggcaaaggatggttgcagcgagtcgaacaatgc
attcttcatatggatatttcatcactggattttaatcaggtagtcagactgtgtcgtgag
catgggttatatggtgctctaatttatttatttaaccaagggttgaatgatttccgtaca
cctctagaggaacttctatctgtcatccagaatgctactcgaaaagatgctacttctact
tgctacagaatgcttgtttatctgaagtattgcttccagggcctagcatttcctccaggg
catggaataattccccgagctcagcttcatgcagtgagaaaagaacttctgcaattcatg
ctcgaggactctaaaatgctcacttctgaagtatttaagggttttagttcttcttctgga
aaatgcccaaacatatgctatctactatggatggatacggaagctactttggaagttgtc
aagtgtgcttttgcacaagagaatttggaacctacttctagtactcttgattcatctgta
tctaaggatgaagaagatactgatattgaaagcccagatagtcaaaatattttgttacaa
agtgtagttgacaccatcatccgtattgctggtttagaaaatgaggcgatccattccgtt
gttgtgggtactgctgagtcagaagaatcggaactttggccttcagtgagtgacttcggt
catatcattgaattcgtgtccttttttgtttcccataaaagggcaaatgcatctcaaaga
gttctcaagcacattcttaaatacctcacgtcatccactacatcatatgatgataaaaag
atgccacctcagaaagaagttcttcagctcttcaacgtggtttctcaaactgactggaat
tctgattatgtgttgaatctttgtttagatgcccattttcatcaggcctgtggcatgata
tatacagccagaaatcaaaatttggctgctttagatagttacatgaaggatacaatggaa
ccataccatgcatttatcttcatcaacaaaaagttacttcaattggcaagtgatgaagct
ttgtcgtttcgttccacagtaatatctcgttttgctgagctagtcaacctaagcagggag
tgtgcatttgtcttggtcattgatcattttcacgatgagatccagcaaatattggcagag
cttcattctgatcaccgcagcctctttcttttcttgaaaactgcaatcgaagtacacttg
tcaggaaaacttgacttcagtgaacttactgccataaactatgaaattgttgaaagtctg
tactctggcgaactcgaagattatctccagagattatcaaatctcccaaagttgtttgac
cgcaatcctatttctatgactgataagttagttgaactctatctggagcttctgtgtcag
tatgaaccaaggtcagttctgaagtttctggagactttcgatagctacagattggagagg
tgtttgctcctttgtctagattatggagttacagatgctgctgcatttctgcaagagagg
gttggtgatgttgcgagcgcgttggaacttgttctagctggactagatgagaaagttaac
cagtttatcgcttcagtggaaaatgtgttctctcggacatcgtctaagagtatctctgaa
attgagcaaccagacattgttctaaacatgagcgaggctcgtcctgtgcttgatgtgtta
cgttcctccattggattgtgccaaaggaattcacagcgtttagatccagaggagtctcag
ttactttggtttcaacttgttgactctttctcagatccactgaaaaagttgtatggaagc
aaggttgtaaatgaaaaaggttgttggtccgtgggtggtgaaacaacaaatggacatcca
gcaggcaaaggattctcacaaaaaatggtgaattcagcttatcaaaggtgtttgaatact
ctgcggagagttttctcacaatttgttggagaaataattgaggcaatggctgggtatata
cccctgccagcaattatggcaaagctattatctgacaatggaagtcaagagtttggtgat
tttaaacttgtcatacatagaatgttgtctatgtatctctacgaaaaaagaatactggaa
acagctaagtcagttatcgaggatgattcgttctataccttgagcttattaaagagaggg
gtttgtcatggatttgctccacagacttttgtctgttgtgtatgcaactgctcactttct
aaagaaggtgctatttcagcagttcgagtattcagttgtggacatgcaacacatcttcac
tgtgagtctgaacaaagcaaatcatccaataaggattttaaagatggatgtccagtttgt
ctctcaatgagtgacacacaagcccggaacaaatcacctataatagctgagaatgggcta
tccaagtatcccgtggttgaacatgaagtaccatatggcgtccatcataatcacgagaca
gatcatgttgagagatctcgtgggcttcaccagatgtcacggtttgaaatactgaacaat
ctccagaaaggtcagaagtcttttcatattgagactgtacccccgttgaaactttctccg
ccagccatatatcatgaaaagatacaaaagaaagtaagtttggtgggagaatccagcaga
cagtcagttagaagtgaaaaaccacagaaaatatggcacatgaaggagccaaaatcaaag
aaatcagggaattggcttccaccaaagtcaagcatattcagttctgacaagaatcaagtg
tggtag
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integrated database retrieval system
