Triticum dicoccoides (wild emmer wheat): 119320571
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Entry
119320571 CDS
T07278
Name
(RefSeq) pre-mRNA-processing factor 19
KO
K10599
pre-mRNA-processing factor 19 [EC:
2.3.2.27
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03040
Spliceosome
tdc04120
Ubiquitin mediated proteolysis
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119320571
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
119320571
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tdc03041
]
119320571
04121 Ubiquitin system [BR:
tdc04121
]
119320571
03400 DNA repair and recombination proteins [BR:
tdc03400
]
119320571
Enzymes [BR:
tdc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119320571
Spliceosome [BR:
tdc03041
]
Complex B
Other components
Prp19 complex
119320571
Complex C
Prp19-CDC5 complex
119320571
Ubiquitin system [BR:
tdc04121
]
Ubiquitin ligases (E3)
U-box type E3
119320571
DNA repair and recombination proteins [BR:
tdc03400
]
Eukaryotic type
Other factors with a suspected DNA repair function
PSO4 complex
119320571
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_WDHD1_1st
Prp19
Beta-prop_EML_2
WD40_CDC20-Fz
WD40_MABP1-WDR62_2nd
WDR55
EIF3I
Beta-prop_TEP1_2nd
Beta-prop_CAF1B_HIR1
ANAPC4_WD40
Beta-prop_WDR90_POC16_2nd
Beta-prop_SCAP
Beta-prop_EML
WD40_MABP1-WDR62_1st
Beta-prop_TEP1_C
Beta-prop_IFT140_1st
Beta-prop_WDR19_1st
Beta-prop_DCAF12
Beta-prop_Vps41
Beta-prop_WDR75_1st
Beta-prop_EIPR1
WDR90_beta-prop_4th
Beta-prop_HPS5
Beta-prop_IFT122_1st
Beta-prop_SPT8
NBCH_WD40
Beta-prop_DCAF4
eIF2A
U-box
zf-Nse
PEP5_VPS11_N
PAN2_N
KNTC1_N
PAS_11
Beta-prop_NWD2_C
PUMA_CC
Motif
Other DBs
NCBI-GeneID:
119320571
NCBI-ProteinID:
XP_037450520
LinkDB
All DBs
Position
1B:77569811..77579995
Genome browser
AA seq
527 aa
AA seq
DB search
MICAISGEVPDEPVVSKRSGLLFERRLIERYIEDHGKCPVTKEELSMDDIVLVKTNKVVR
PRPLQAASIPGLLGIFQNEWDALMLSNFALEQQLHTARQELSHALYQHDAACRVIARLKK
ERDESRALLALAERQIPASMAGVAPAAVVSNGKRAMEDEIGPDGKKIRPGINPVMIDELT
ECNTMLSAQRKKRQVPPSLASIDELERYTQISSHPLHKTNKPGILSMDIHPSKDIVATGG
IDTNAVLFDRTSGQILCTLAGHSKKITTLKFVPRDELVVTGSADKTVRIWQGGEEGNYSC
IHTLKDHTAEVEAVTVHATQKYFVTAAKDNTWCFYDISTGSCLSQVGEASGQEGYTSASF
HPDGLILGTGTTEAVVKIWDVKTQSNVAKFEGHAGPVTAMSFSENGYFLATAALDGVKLW
DLRKLRNFRTFSPYDSDTPTNSVEFDFSGTYLAVAGSDIRVYQVANVKTEWNLIKTLPDL
SGTGKVTSAKFGTDAKYIAVGSMDRNLRIFGLPGDDQMDDDAKPSAE
NT seq
1584 nt
NT seq
+upstream
nt +downstream
nt
atgatctgtgcaatctccggcgaggtgccggatgagccggtggtatcaaagaggtcgggg
ctcctctttgagcggcggctcatcgagcgctacattgaggaccatggaaagtgtccagtt
acgaaggaggaactctccatggacgacatcgtgctggtgaagaccaacaaggtcgtgagg
cccaggcctctgcaggctgcaagcattcccggactccttggaatctttcaaaacgagtgg
gatgctcttatgctttctaattttgctttggagcagcagcttcacacagcaagacaagaa
cttagtcatgcgttataccagcatgatgctgcttgccgtgttatagccagattaaagaag
gaaagagatgagtctagagcacttttggctctagctgagagacagattcctgcgtcgatg
gcgggagttgcacctgcagctgtcgtttccaatggaaaaagagcaatggaggatgaaatt
ggccctgatgggaagaagatacgccctggtatcaatcctgtcatgatcgatgaactaaca
gagtgtaataccatgctttctgcccagcgtaagaaacgacaggtaccaccaagtttggca
tcaattgatgaactggagagatatactcagatctctagtcatccactccacaagacaaat
aagccaggcattttgtctatggatatccatccgtcaaaggacatagttgcaactgggggt
atcgatacaaatgcagtgctatttgataggacatctggtcaaatcctgtgcacacttgct
ggtcactccaagaagataaccaccttgaaatttgttccacgggatgagctcgtggtaact
ggatcagcagataagactgttcggatttggcaagggggtgaggagggaaactacagttgc
atccatacattgaaagatcataccgccgaggtcgaagctgttactgtgcatgcgactcag
aagtactttgtgaccgctgccaaggataatacttggtgcttctatgatatttcaactggg
tcttgcctctcacaggttggcgaggcttcaggacaagagggatatacatctgcgtctttc
cacccagatggtcttatccttggaacaggaactactgaagctgttgtcaaaatttgggat
gttaagactcagtccaatgttgcaaagtttgaggggcatgctggacctgtcactgctatg
tccttctctgaaaatggttacttcctggcgactgctgctcttgatggtgtcaagctttgg
gatttaaggaaattgagaaattttaggactttctcgccatatgattcggacacgccgaca
aattctgtggaatttgattttagcggtacctaccttgctgttgctggttcagatataagg
gtttaccaagtagccaacgtcaagacggaatggaatcttatcaagaccttgccagatttg
tcaggaacagggaaagtgacttctgcgaagtttggcactgacgccaaatatatcgccgtc
ggctctatggaccgtaacctgaggatatttgggcttcctggagatgatcaaatggacgat
gatgcaaaaccatcggccgagtga
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