Triticum dicoccoides (wild emmer wheat): 119322146
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Entry
119322146 CDS
T07278
Name
(RefSeq) rRNA biogenesis protein RRP5-like isoform X1
KO
K14792
rRNA biogenesis protein RRP5
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03009 Ribosome biogenesis [BR:
tdc03009
]
119322146
Ribosome biogenesis [BR:
tdc03009
]
Eukaryotic type
90S particles
Other 90S particles
119322146
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
S1_RRP5
S1
OB_RRP5_4th
OB_RRP5
Spt6_S1
Suf
HAT_Syf1_CNRKL1_N
HAT_PRP39_C
HAT_PRP39_N
HAT_Syf1_CNRKL1_C
NRDE-2
Motif
Other DBs
NCBI-GeneID:
119322146
NCBI-ProteinID:
XP_037451540
LinkDB
All DBs
Position
1B:105950039..105969476
Genome browser
AA seq
1894 aa
AA seq
DB search
MAPHGDRKKGKGADRPGKPGLGPNRKEFKNHRKEEGEKAGGAEEEQEQQQPAPHPAALFN
AADDGDFPRGGRSLLSRDEMAEARTEAEVEFEKEERRGKKKRKANASSGIDGDDDLGTLF
GGATTGKLPRFANRITLKNISPSMKLWGVVIEVNQKDIIVSLPGGMRGFVRTEEVSDIAL
HGNSKDNEGSVCAEVVHVGQLVPCMVLQVDDDKKEGKAHKRVWLSLRLSRMYKGLSLDAI
EDGMVLTAQVKSVEDHGYILYFGVSTFSGFMPKAGKETVKIESGQLIQCVVKGIDKTRSI
IHLSSDEDLISKSIIKDLKGLSIDHLIPGMMMSARVHSVLENGVMLSFLTYFTGTADIFN
LSSSFPSGNWKDDYSKNKKVNARILFVDPSTRAVGLTLNQHLLRLNVPPINVKVGEIYDK
SRVLRVDKKAGLFLEIPSPTPSPGFVSIHDVSDKDVKNVEKKFREGSLTRVRVLGVRHLE
GVALGTLKDSAFEGSVFTHADVKPGMVVRAKVVTVEPFGAIVQFSSGVKALCPLPHMSEL
DNIVKPPKKFKAGAELLFRVLGCKSKRITVTYKKSLVKSKLEVLASYADAKTGLVTHGWI
TKIEKHGCFVRFYNGVQGFVSRSELGLEPGIEAESVYHVGQVVKCRIVSVVPTSRKLYVS
FTMSSNRVIQADTAKVGTIVSGVVERLTPATVVVSVNGFSKGSILNEQLADHHGQAAQLK
NLLKPGHEFNQLLVLDTEGQNLVLSAKHSLINTANDIPSEISQMQSGAVVHGYICNIIEA
GCFVRFLGHLTGFSPKDKAVDRPIEKLSDVFCVGQSVRSHVLNVNAESARVKLSLQQSMC
SSPDCSFIQGYFLLDQKIAALKYSGPSTSHDWVKYFGIGSLVKGEVGAVEEYGVILNFKD
HPDVVGLVEHHQLGGSTVKVGSSVKGLVVDLSDGVVNLSLKPELVGSVSKDGKKKKRHRA
ANLDLELREEVNAVVEIVKDSYVVLSVPEYNHAIGFAPLMDYNSQLLPQHHYDNGQCITV
VVGSIPSSDPSGRLILLPKGSAQDSSISSSKRAKKKSDYKVGSLVEAEIIDIKPLEVISK
FGVNLHGRIHITEVLEEDCSEHPFSKLKIGQKVHARIVAQAEHSAKTGRNLKWELSIKPS
LLKADLEELTASEAELNHSINDIVRAYVVKVDTEWIWLTVSRKFMAHLFILDSSVEPSEL
KEFQQRYSVGQAVKGHIIGVNREKRLLRLKAFDNQCMLEDIDDTQKTASSIAEHTKEGDI
IGGRIQRILPGVGGLVIQIGPHLHGRVHYTEIVDSWVPEPLSGIHEGQFVKCKVLAVSRQ
AEGSLRVDLSLRSRKLDDSTICGPRFEKINDLCPGTEVKGYVKNVNPKGCFIMLSRMVEA
RIILSNLSDEYVENPQKDFSVGMFVQGRVLSAEPLSGKVEVSLRRSTGSKSQKLDDISYS
DLHVGDIVDGQVKRVESYGLFVTIKSSELVGLCHVSELSDEPVLDINACYKAGDMVKAKI
LKIDEDRHRVSLGLKESYFDSDLTDDENGNGRVPMDISRAPQMSGGFNSTLVLPGPEPRA
SVPPLQVSLDEYEGSDQEGDQKAHEIANGSESNVKKSDRRLKEKARKQREIEISALEERA
LQKDIPQTPDEFEKLVRSSPNSSFVWIKYMAFLLDLADVEKARSVAERALRTINIREEEE
KLNVWVAYFNLENEYGSPREDAVKKIFQRALQYCDPKKVHLALLGMYERTKQNELADELF
DRMTKRFKTSCKIWLRRIQFSLTQGKDVEYIKSVVNRALLSLPQSKRIKFLTQTAILEFK
CGVAEEGRSRFELILREYPKRTDIWSVYLDQEIRLGDTEIIRALFDRVTCLSLPPKKMKF
LFKKYLRYEKAQGDEERIEHVKQKALEYVEISRA
NT seq
5685 nt
NT seq
+upstream
nt +downstream
nt
atggcgccgcacggcgacaggaagaaggggaagggcgcggaccgcccgggcaagccgggg
ctgggccccaaccgcaaggagttcaaaaaccaccgcaaggaggagggggagaaggcgggc
ggcgcagaggaggagcaggagcagcagcagccggcgccgcaccccgcggctctgttcaac
gccgccgacgacggcgatttccccagaggagggcgcagcctcctgagcagggacgagatg
gccgaggcgcgcaccgaggccgaggtggagttcgagaaggaggagaggagggggaagaag
aagaggaaagccaacgcctcctcgggaatcgacggcgatgatgacctggggaccctcttc
ggcggggctaccaccgggaagctcccacgcttcgccaatcgcatcaccttgaagaatatt
tcaccaagcatgaagctttggggtgttgtaatcgaagttaaccaaaaagacattatagtg
agtctacctggcggaatgagagggtttgttcgcacagaggaagtttcggacattgctttg
catggaaatagcaaggataatgagggcagtgtatgtgctgaagttgttcatgttggtcag
cttgtaccttgtatggttctgcaagttgatgatgataagaaagaaggaaaagcacacaaa
cgggtttggttatcattgcggttgagccggatgtacaagggtctttctctggatgctatc
gaggacggaatggtgctcactgctcaagtgaaaagcgtcgaggaccatggttacattctt
tatttcggagtatccacatttagtggatttatgccgaaagctggcaaagaaactgtgaag
attgagagcggacaactcatacaatgtgtcgtgaaggggattgataaaactcgctctatt
attcacttgagttccgatgaagacttgatctctaaatccattattaaagatctgaaaggc
ctttccattgatcatctaattcctggcatgatgatgagtgcacgtgttcattcagtcctt
gaaaatggagttatgctatcatttcttacttacttcactggaacggctgatatttttaat
ttgtcgagctccttcccttctggtaattggaaagatgattacagcaagaataagaaggta
aatgcccgcatcttgtttgttgatccgtcaacaagagcagttgggcttacattgaaccaa
cacttacttcgtcttaatgtaccccccattaatgttaaagttggagaaatatatgacaaa
tcacgggtgctgagggtggataaaaaggctggtctttttcttgaaataccttctccaact
ccatcacctggatttgttagtatacacgatgtatcagacaaggatgtgaagaatgtggag
aagaagtttagggaaggcagcttgacacgtgtccgtgtacttggagtgcgacatcttgaa
ggagttgcactaggcaccctaaaggacagtgcttttgaaggttctgttttcactcacgct
gatgtcaaaccaggaatggtagtgagagctaaggtagttactgttgagccttttggcgca
attgtgcagttttcaagtggtgtgaaagcactttgcccacttcctcacatgtctgagtta
gataacattgtaaagccaccgaagaaatttaaggctggagctgaactactttttcgtgtt
ttgggttgcaaatccaagagaataacagtgacatacaagaagtctctggtcaaatcaaaa
cttgaagtgttggcctcgtatgctgatgccaagactggtttagtgactcatggatggatt
actaaaatagaaaagcatgggtgcttcgtgagattttacaatggagttcaggggtttgtt
agcagatctgaacttggactagagccaggcattgaagctgaaagtgtttatcatgttgga
caagttgtcaaatgtagaattgtaagcgtggtccccacttcaaggaaactatatgttagt
tttacaatgtcttctaatagggtcattcaagctgatactgcaaaggtgggtactattgtc
tctggtgttgtggagcgacttactcctgcaactgttgtggtcagtgtcaatggcttctcc
aagggatctatacttaatgaacagttggcagatcatcatggccaagctgctcagttgaag
aatttgttgaagcctggccatgagttcaaccagcttttagttcttgatactgaaggccaa
aatttagttctttccgctaagcactcacttatcaacaccgcaaatgacattccatcagag
atatcacagatgcaatctggagctgtagttcatggttacatttgcaacatcatcgaagct
ggttgttttgttcgctttcttggacatctaactggtttctctcccaaggataaagcggtt
gacaggccgatagaaaagctttctgatgtgttctgtgttggccaatcagttcgtagtcat
gtcctcaatgtgaatgcggaatctgctcgagtaaagctttcactccaacagtccatgtgc
tcttcacctgattgttcatttattcaaggatattttcttctcgatcagaagattgcggca
ttgaagtattcaggtcctagtacttctcatgattgggtgaaatattttggcattggtagc
ttggttaagggtgaggtgggagcagtagaagaatatggtgttatccttaacttcaaagac
catcctgatgttgttggtctagttgaacatcatcagcttggtggcagtactgtaaaagtg
ggttcttctgtgaagggtcttgttgtggatttatctgatggagttgtaaatttatcgctt
aaacctgaactagttggcagtgtcagcaaggatgggaaaaagaagaaacgtcacagagcc
gcaaatttggacttggagcttcgggaagaagtcaatgcagttgtggagatagtcaaagac
agctatgtggttctttctgtccctgagtataatcatgcaataggctttgcaccgttgatg
gattacaactcacaattgcttcctcaacatcactatgataatgggcagtgcattaccgtc
gtcgttggaagtatcccaagttctgacccttctggaagacttatccttctcccgaaagga
tcagcccaggattctagtatctctagttctaaaagggctaagaagaaatcagactacaaa
gttgggtcacttgttgaagcagagattattgatatcaagccgcttgaggttatttcgaaa
tttggtgtcaatcttcatggaaggattcatattactgaggtccttgaagaagattgcagt
gagcatccctttagtaaactcaaaatcgggcaaaaggtccatgcaagaattgttgcacaa
gcggaacattcagcaaaaactggcagaaatttgaaatgggaactatctattaagccatcc
ttgcttaaagcagacttggaagaattaactgcatctgaagctgaattgaatcattcaatt
aatgacattgtgcgtgcttatgtcgtcaaggtggatacagagtggatctggttaactgta
tccagaaagttcatggctcatttatttattctcgatagttcagttgagccgagtgaacta
aaagagttccaacagcgttatagtgtcggtcaagcagtgaaaggacacattattggggtg
aacagagagaaaaggttgttgaggctgaaagcatttgataaccaatgcatgctcgaggat
atagatgacacacaaaaaacagcatcttccattgctgaacacacgaaggaaggagatatc
attggcggacgcatccaaaggattctacctggtgttggtgggcttgtcatccagattgga
cctcatcttcatggaagagttcattatactgaaattgttgattcgtgggtacctgaaccc
ctatctgggatccatgaaggccaatttgtgaagtgcaaggtcctggctgtaagccgccaa
gctgaaggatctctccgagttgacctatcacttcgctcaagaaaacttgatgattcgaca
atttgcggtccccggtttgagaagatcaacgatctgtgccccggtacagaggttaagggt
tatgtgaagaatgtgaatcccaaagggtgtttcatcatgctttctcgaatggttgaggct
aggattattttgtcaaatctgtcagatgagtatgtcgaaaatcctcagaaggatttctca
gttggaatgtttgtacagggaagggtattgtctgcggaaccactatcagggaaagttgag
gtatcacttaggaggagcactggtagcaaatcacagaagttggatgacattagctacagt
gacctacatgttggggacatcgttgatggtcaagttaaacgggttgaatcctatggatta
tttgtgacaatcaagagcagcgaactggtgggcttgtgtcatgtatcagaactttctgat
gaaccagttcttgatatcaacgcttgctacaaagctggcgatatggttaaagctaaaatt
ttgaagattgacgaggatcggcaccgagtgtcccttggccttaaggaatcttactttgac
tctgatctgactgatgatgaaaatggcaatggaagggttcccatggacatcagccgtgcc
cctcagatgtccggaggttttaacagcaccttagttcttcctggacccgaaccccgggct
tctgttcccccacttcaggtcagcttggacgaatatgaaggttctgaccaagagggtgat
cagaaagctcatgaaattgctaacggaagtgaatcaaatgtaaaaaagagcgatagacgg
ttaaaggagaaggcgagaaaacaaagggaaatagaaatcagtgccttggaggaaagggct
ttacagaaagatataccacagactccagatgaattcgagaagttggtgaggagctctcca
aatagtagcttcgtctggattaagtatatggcatttttgttagaccttgcggatgttgag
aaagcacgttcagtagctgaaagggctttgagaacaataaacattagagaggaggaggag
aaactcaatgtatgggtagcatactttaaccttgaaaatgaatacgggagtccacgggag
gatgctgtcaagaagatattccaaagagccttgcagtattgtgatcccaaaaaggtgcac
ttggctcttcttggaatgtacgagaggactaaacagaatgaactggcagatgaacttttt
gatagaatgaccaaaagattcaaaacttcgtgcaagatctggttgcgccgcattcagttt
tctctcactcaaggcaaggatgttgaatacatcaaatctgtcgtaaaccgtgcgcttctt
agtctgccacaaagcaagcgtataaagtttctcacgcagactgctatcctggagttcaag
tgtggggtggctgaggaagggagatccagatttgagctgatcctaagggagtatccgaaa
agaacagatatttggagtgtttacctagaccaggaaattcgacttggtgacacggaaatt
atacgggcattatttgatagagtgacatgccttagtcttcctccaaaaaagatgaagttc
ttgttcaagaaatacctgcgatatgagaaggctcagggcgatgaagaaagaatcgagcat
gtgaagcagaaggcattggagtacgttgagatctctagagcctga
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integrated database retrieval system
