Triticum dicoccoides (wild emmer wheat): 119322870
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Entry
119322870 CDS
T07278
Name
(RefSeq) enhancer of mRNA-decapping protein 4-like
KO
K12616
enhancer of mRNA-decapping protein 4
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119322870
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119322870
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119322870
mRNA degradation factors
5'-3' decay
Decapping complex
119322870
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
EDC4_C
Ge1_WD40
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WD40_Prp19
Beta-prop_CAF1B_HIR1
WD40_MABP1-WDR62_2nd
WDR55
Beta-prop_TEP1_2nd
Beta-prop_EML_2
Beta-prop_Vps41
Beta-prop_TEP1_C
DUF445
Motif
Other DBs
NCBI-GeneID:
119322870
NCBI-ProteinID:
XP_037452305
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All DBs
Position
6B:complement(562426606..562435110)
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AA seq
1357 aa
AA seq
DB search
MASPAGNPNPNPGNTNPPFEMAMLFRPPPNPAPTAAPMFPGAAGPPPHSGPYSYPPATPP
FHLRPYLHYPQDPQPPMPRPVIPFPMPNPNANPNPGANPMAAAGPNPGARLMQLLGSSGS
GHLESAVSMPPPSSEFAAAQPSPLPAMPSAPPARMLSSTSSKVPRGRLLGGGDKAVHNVD
SRLPGEAQPPQLEVTPITKYTSDPGLVLGRQIAVNRTYIVYGLKLGNIRVLNINTALRSL
LRGHTQRVTDMAFFAEDVHRLASASVDGRIYVWRIDEGPDAENKPQITGKIEVAIQIVGD
AEAYHPRICWHSHKQELLFVGIRNCVLRIDTTKVGRGRDFNAEEPIKCHLDELIDGVLLV
GRHDGDVTDLSISQWMTTRLASGSNDGTVKVWDDRKLAPLSILKPHDGQAVYSVAFLTAP
ERPHHINLITAGPLNREIKIWASTNEEGWLLPSDSETWNCTQTLELVSSREPKVEEAFFN
QVAVLPQASIILLANAKKNAIYAVHVEYGSDPASTRLDYIADFTVAMPILSLTGTHESQP
DGEQVVQVYCVQTMAIQQYGLELSLCSPPTSDTTSFGRDPVVSRVYDTPLEVVGAESSTG
TSFTDSYTVGTSSKQSTFDQTAEFDLKPSAPPLTYTEGDGSAHLQSAPLASNTDLPGSGP
SVGNRDKDQSAFDYSTSRITEPVALTRQDTPMPKPVALARQDTPMPKPVALARQDTPMPK
DNFGKDELRDSHSDVQMLPNPRMMFKVGGNATHLITPSEIISGALSAESNQVSKSDGAKI
QDDSISSPRIAEVEAKHVDESKSNHALELEAVKEAQVVRENSEKDQNSLEQTVEMISERS
VTTDKYSVEESRSPSDRLVPDHTGAAGENVSNKTVEKPGISDSSVSREQSSSYTKDKVFH
PQASGQSSPSTSAFNSTESSHEPVSSAYPPIESSSEVADMLQQLIAMQKDMQKQLGTIVI
APIAKEGKRIETSLGRTMEKSIKASIDALWARFLEENTKREKAERERMQQMTTLITSSIN
KDLPAMLDKLVKKEVSSLGPVVARAMTPIIEKFLTSIVADAVQKAVGDKVVNQLDKSVTA
KLEATLARQIQMQFHTSVKQTLQDVLRTSFESLLVPAFEQSCKTMFEQVDSAFQKGMSEH
AVAIQQQVEAAHTPLALTLKETITSASSITQNLTSELLDGHRKLLALVTSGNANAQNTNV
LQPNNGPITGPPEVEAPLDPMKELGRLLAEHKFDEAFTVALQRSDVSIVSWLCSQVDLRG
LCTMAPVPLNQGVLLALLQQLAVDIGTETSRKIQWMTDVAMAINPTDQVIAIHVRPIFEQ
VYAKLAHHRSLPTTSPLDNSNLRLLMHVINSVLLSYK
NT seq
4074 nt
NT seq
+upstream
nt +downstream
nt
atggcgtctccagcaggaaaccctaatccgaaccccgggaacaccaatccccccttcgag
atggccatgctcttcaggccgcctcccaaccccgcgccgaccgccgcgcccatgttcccc
ggcgccgccggcccgccgccgcactccggcccctactcctacccccccgccacccctccc
ttccacctccgcccctacctccactacccgcaggatccccagccccccatgccccgaccg
gtcatccccttccccatgcccaacccgaacgcgaaccccaacccgggcgctaaccccatg
gccgccgcgggccccaaccccggcgcccgcctcatgcagctgctcggcagctccggctcg
ggccacctcgagtccgcggtatctatgcccccaccgtcgtcggagttcgccgccgcgcag
ccgtcgccgctcccggcgatgccatccgcgccgccggcgaggatgctcagcagcaccagc
agcaaggtgccgagagggcggcttctgggtggcggggacaaggcggtgcacaacgttgac
tcgaggctgcctggggaggcgcagccgccacagctggaggtaacgccgatcaccaagtac
acgtcagacccaggtcttgtgctgggcaggcagatcgctgtaaaccggacgtacatcgtc
tatgggctcaagctggggaacatccgtgtgctaaacatcaacaccgcgcttcggtcactg
ctccgtggccatacacagagggtcacggacatggctttcttcgctgaggacgtccatcgt
ttagcaagcgcaagtgtggatggacggatatacgtgtggaggattgatgaggggcctgat
gcagaaaataaaccacaaattacaggaaagatagaagttgccatacaaattgtaggtgat
gccgaagcttaccatccaaggatatgttggcactctcataagcaagaacttctgtttgtt
ggaatcagaaactgtgtcttaagaatagacacaactaaagtgggaaggggaagagacttt
aatgctgaagaacctatcaaatgtcatcttgacgagcttattgatggtgtactcttggtt
ggtaggcatgatggtgatgtgacagatttgtccatatctcagtggatgactacccgactc
gcttcaggatcaaatgatggcacggtaaaggtttgggacgatcgcaagttagcgcctcta
tcgattctaaagccacatgatggtcaagctgtttactcagttgcctttcttacagcacct
gagcgcccgcatcatataaatctcatcactgctggtcctctaaaccgagaaattaaaatt
tgggcttctactaatgaagaaggttggttgttgccaagcgactctgagacttggaattgc
acccagaccctggaacttgttagttctcgggaacctaaagtcgaggaggcatttttcaac
caagttgcagtgctgcctcaagcaagcattatcttacttgcgaatgcgaagaagaatgct
atttacgctgtgcatgttgagtatggctcagaccccgcttctacccgcttggattatatc
gcagattttacagtcgcgatgcctattttaagtcttactggcacacacgaaagccaacct
gatggtgagcaggtagttcaagtctattgtgtccaaacaatggccatccagcagtatggg
ctggagttatcactttgttcacctcctacttctgatactacctcatttggaagagaccct
gttgtttcacgtgtttatgatacacctctggaagtggtaggagcagagtcatccacggga
actagctttacagattcttataccgtcggtacttcgagtaaacaatcaacttttgatcag
actgcagagtttgatcttaagccatcagctccaccacttacatacacagaaggtgatggt
tctgcgcatcttcagtctgcccctcttgcatcaaacactgatcttcctggatcaggacca
tcagtaggcaaccgtgacaaagaccaatcagcttttgattattcgacaagccgaatcact
gagccagttgccttgactaggcaagatacacccatgccaaaaccagttgccctcgctagg
caagatacacccatgccaaaaccagttgcccttgctaggcaagatacacccatgccaaag
gacaattttggaaaggatgaattaagagacagccacagtgatgttcagatgctcccaaat
cctcgcatgatgtttaaggtaggaggaaatgccactcatctcataactccatctgaaatt
atatcaggtgctctgtctgctgaaagcaatcaggtctctaaatctgatggcgcaaaaatc
caggatgactctattagtagccctcggattgcagaagtggaagcaaaacatgtcgatgag
agtaaatctaatcatgctttggaacttgaagctgtcaaggaagctcaagttgtccgtgag
aactcagagaaagatcaaaattcgttggagcaaactgttgaaatgatcagtgagcgttca
gtaacaactgataagtatagcgtggaagaatcacggtcaccatctgatagactggtccct
gaccatactggtgctgctggagaaaatgtttcaaacaaaaccgtagaaaaacctggcata
agtgactcctctgtctctagggagcaatcatcttcatatacaaaggacaaggtttttcat
cctcaagcatctggtcagtcatcaccttctacaagcgcatttaactcaactgagtcttca
catgaacctgtcagcagtgcataccctcctattgaatcctcttcagaagttgccgatatg
ctgcaacagctaatagccatgcagaaggatatgcagaagcagctaggtactatcgttatt
gctcccattgcgaaggaaggcaaaagaattgaaacatcactaggccgtacaatggagaaa
tctatcaaggctagcattgatgccttgtgggcccgtttcctggaggagaacacaaaacgt
gagaaggctgaaagggaacgaatgcagcaaatgaccactctcatcacaagctcaataaac
aaggaccttcctgctatgttggataagttagtaaagaaagaagtttcttcacttggacct
gttgttgcacgggcaatgacacctattattgagaagttcttaacctctatagttgctgat
gcagttcagaaagcggtgggtgacaaggtggtgaatcagctggacaaatctgttactgca
aaacttgaagctacacttgctaggcaaatccaaatgcaatttcatacatctgtaaaacag
actcttcaggatgttttacgcactagctttgaatcattgcttgttccagcatttgaacaa
tcatgtaagacaatgtttgagcaagtagacagtgcattccagaaaggaatgtctgagcat
gctgttgctattcagcagcaggttgaggcagcacatactccattggcgcttactttaaag
gaaactatcacttctgcgtcctcaatcacccagaatctcacatcagagttacttgatggg
catcgcaaacttttggcgctggttacatctggcaacgccaatgcgcaaaatacaaatgtt
ctgcagcccaacaatggtcctatcactggcccaccagaggtcgaggcaccattagacccg
atgaaggagctgggaagactgctagctgaacacaaatttgacgaggcttttacagtagca
cttcaaagaagtgacgtgtcaattgtgtcttggttatgctctcaggttgatttgcgtgga
ttatgtacaatggccccagtccctctgaaccagggagtcctcctagccctactccagcag
ctagcagttgatattggcaccgagacatcccggaaaattcagtggatgacagatgttgcc
atggcgatcaatccgacagaccaagtcatcgccatacatgtgaggcccatcttcgagcaa
gtctacgccaaattggctcaccaccggtcgctccccaccaccagtccattggataacagc
aatctccgcttgctcatgcatgtcatcaactcagttctgcttagctacaagtga
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