Triticum dicoccoides (wild emmer wheat): 119322881
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Entry
119322881 CDS
T07278
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
KO
K10143
E3 ubiquitin-protein ligase RFWD2 [EC:
2.3.2.27
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc04120
Ubiquitin mediated proteolysis
tdc04712
Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04120 Ubiquitin mediated proteolysis
119322881
09150 Organismal Systems
09159 Environmental adaptation
04712 Circadian rhythm - plant
119322881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tdc04121
]
119322881
Enzymes [BR:
tdc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119322881
Ubiquitin system [BR:
tdc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119322881
Multi subunit type E3
Cul4 complex
Target recognizing subunit (DCAF)
119322881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
WD40_Prp19
WD40
WD40_CDC20-Fz
WD40_WDHD1_1st
WDR55
Beta-prop_EML_2
Beta-prop_TEP1_2nd
Beta-prop_RIG_2nd
Beta-prop_EIPR1
Beta-prop_WDR19_1st
WD40_MABP1-WDR62_1st
Beta-prop_DCAF4
EIF3I
Beta-prop_HPS5
zf-C3HC4_2
WD40_MABP1-WDR62_2nd
Beta-prop_WDR90_POC16_2nd
Beta-prop_CAF1B_HIR1
Beta-prop_EML
zf-C3HC4
Beta-prop_TEP1_C
WD40_like
WD40_RFWD3
zf-C3HC4_3
Beta-prop_WDR75_1st
zf-RING_2
zf-C3HC4_4
Beta-prop_DCAF12
Beta-prop_IFT140_1st
zf-RING_UBOX
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
zf-RING_5
U-box
zf-RING_10
RING_XB3-XBAT31
zf-Nse
Motif
Other DBs
NCBI-GeneID:
119322881
NCBI-ProteinID:
XP_037452314
LinkDB
All DBs
Position
6B:628879474..628885819
Genome browser
AA seq
693 aa
AA seq
DB search
MGDSSVAPAGALVPSVPKPEHAPSGGDPAAQLQALAAAADDACAGASPSSSPEAAEGAEA
DAAGDRDLLCPICMGLIKDAFLTACGHSFCYMCIVTHLNHKSDCPCCANYLTKAQLYPNF
LLDKVVKKMSARQVAKTASPIDQFRHVVQQGNDMTVKELDSLMTLIAEKKRQMEQQESET
NMQILLVFLHCLRKQKLEELNEIQTDLQYIKDDISSVERHRLDLYRTKERYSMRLRMLLD
EPAASKMWPSPMDKPSSPFVPNSRAPPSTSSPGGLNNRRFDLRAPASHQGHQRRDALASS
DPPNPPLQSGNVIARKRRVQAQFNELQEYYLQRRRTGAQSHRQEDAVTMNREGYHEGLED
FQSVLTTFTRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDELFATAGVSKRIKVFEFST
VVNEPSDVHCPVVEMATRSKLSCLSWNKYSKNVIASSDYEGIVTVWDVQTRQSVMEYEEH
EKRAWSVDFSRTEPKMLVSGSDDCKVKVWCTNQEASAINIDMKANICSVKYNPGSSYYVA
VGSADHHIHYFDLRNPSAPLHVFGGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNCP
LRTFRGHKNEKNFVGLSVNNEYIACGSETNEVFVYHKAISKPASSHRFLSTDLDDAEDDP
GSYFISAVCWKSDSPTMLTANSQGTIKVLVLAP
NT seq
2082 nt
NT seq
+upstream
nt +downstream
nt
atgggcgactcctcggtggcccccgccggcgcgctcgtgccgtcggtgcccaagccggag
cacgcgccgtccgggggcgacccggcggcccagctccaggccctggcggcggcggcggac
gacgcgtgcgcgggcgcctcgccgtcgtcgtcgccggaggcggcggagggggcggaggcg
gatgcagcgggggacagggacctgctctgcccgatctgcatggggctcatcaaggacgcc
ttcctcaccgcctgcggccacagcttctgctacatgtgcatcgtcacgcacctcaaccac
aagagcgactgcccctgctgcgccaactacctcaccaaggcgcagctctaccccaacttc
ctcctcgacaaggtcgtgaagaaaatgtcggcccggcaagttgcgaaaacagcatctccc
attgatcaattccgacatgttgtgcaacagggaaatgacatgacagttaaagagctagac
agccttatgactttgattgctgagaagaagaggcaaatggaacaacaagagtcagagaca
aatatgcaaatattgctagtcttcttgcactgccttagaaagcaaaagcttgaagagttg
aatgagattcaaactgacctgcagtacatcaaagatgatataagcagtgtggagagacat
aggttagatctgtatcgaacaaaagaaaggtactccatgaggctgcgcatgcttttggat
gaacctgctgcatcaaagatgtggccttcgcctatggacaaacctagtagtccctttgtt
cccaactctcgggcaccacctagcacatcatctccaggggggttaaataataggaggttt
gatttgagagcaccggcaagccatcaaggacatcaaagaagagatgcccttgctagctca
gaccctcccaatccccctctacagtcgggtaatgttattgctcggaagaggcgagttcaa
gcgcagtttaacgagcttcaagaatactatttgcaaagacggcgtactggagcgcagtct
cacaggcaggaggatgctgttacgatgaatagagaaggttatcatgaaggtcttgaagat
tttcagtctgtgcttacaacattcactcgatatagtcgcttacgtgtaattgcggaactt
agacatggagatctgttccactcagcaaatattgtatccagtatcgaatttgaccgtgat
gatgagctattcgctactgctggagtctcgaagcgtattaaagtcttcgaattttctaca
gttgttaatgagccatcagatgtccactgtccagttgttgaaatggctaccagatctaaa
ctcagctgccttagctggaacaagtactcaaaaaatgttatagcaagtagtgattatgaa
ggcatagttactgtttgggatgttcaaacccgccagagtgtaatggagtatgaagagcat
gagaaaagagcatggagtgttgatttttcacgtacagagcccaagatgctagtatctggt
agtgatgattgcaaggtcaaagtgtggtgcacaaatcaggaagcaagtgccattaacatt
gatatgaaggcaaatatttgctctgttaaatataatcctggatcgagctactatgtcgca
gtcggatctgctgatcaccatattcattattttgatttacgaaatccaagtgcacctctc
catgtttttggtgggcacaagaaagctgtttcttatgtgaaattcttatcaaataatgag
cttgcatctgcatcgaccgatagcacgttacggttatgggatgtcaaggacaattgccca
ctaaggactttcagagggcacaaaaatgagaagaacttcgtaggactatctgtaaataac
gaatatattgcttgcgggagtgaaacaaatgaggtttttgtttaccacaaggctatctca
aaacctgcttccagccatcggtttctatccacggacctggacgacgccgaggatgatccc
gggtcttatttcatcagcgctgtctgctggaagagcgatagccctactatgctaactgct
aacagccaggggaccattaaagttctcgtgctcgccccttga
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