KEGG   Triticum dicoccoides (wild emmer wheat): 119322881
Entry
119322881         CDS       T07278                                 
Name
(RefSeq) E3 ubiquitin-protein ligase COP1-like
  KO
K10143  E3 ubiquitin-protein ligase RFWD2 [EC:2.3.2.27]
Organism
tdc  Triticum dicoccoides (wild emmer wheat)
Pathway
tdc04120  Ubiquitin mediated proteolysis
tdc04712  Circadian rhythm - plant
Brite
KEGG Orthology (KO) [BR:tdc00001]
 09120 Genetic Information Processing
  09123 Folding, sorting and degradation
   04120 Ubiquitin mediated proteolysis
    119322881
 09150 Organismal Systems
  09159 Environmental adaptation
   04712 Circadian rhythm - plant
    119322881
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   04121 Ubiquitin system [BR:tdc04121]
    119322881
Enzymes [BR:tdc01000]
 2. Transferases
  2.3  Acyltransferases
   2.3.2  Aminoacyltransferases
    2.3.2.27  RING-type E3 ubiquitin transferase
     119322881
Ubiquitin system [BR:tdc04121]
 Ubiquitin ligases (E3)
  Single Ring-finger type E3
   Other single Ring-finger type E3
    119322881
  Multi subunit type E3
   Cul4 complex
    Target recognizing subunit (DCAF)
     119322881
SSDB
Motif
Pfam: Beta-prop_WDR5 WD40_Prp19 Beta-prop_THOC3 Beta-prop_WDR3_1st WD40 Beta-prop_IFT122_1st WD40_CDC20-Fz WD40_WDHD1_1st WDR55 Beta-prop_EML_2 Beta-prop_TEP1_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_RIG_2nd Beta-prop_WDR3_2nd WD40_Gbeta Beta-prop_EIPR1 DSE1_N Beta-prop_WDR36-Utp21_1st Beta-prop_WDR19_1st Beta-prop_DCAF4 WD40_MABP1-WDR62_1st EIF3I Beta-prop_HPS5 zf-C3HC4_2 WD40_MABP1-WDR62_2nd Beta-prop_CAF1B_HIR1 Beta-prop_WDR90_POC16_2nd Beta-prop_EML zf-C3HC4 Beta-prop_TEP1_C ASA1 Beta-prop_NOL10_N WD40_like Beta-prop_WDR41 WD40_RFWD3 Beta-prop_Aladin zf-C3HC4_3 Beta-prop_WDR75_1st PAC11 zf-RING_2 zf-C3HC4_4 Beta-prop_DCAF12 Beta-prop_IFT140_1st zf-RING_UBOX Beta-prop_SCAP Beta-prop_WDR35_TULP_N zf-RING_5 U-box zf-RING_10 RING_XB3-XBAT31
Other DBs
NCBI-GeneID: 119322881
NCBI-ProteinID: XP_037452314
LinkDB
Position
6B:628879474..628885819
AA seq 693 aa
MGDSSVAPAGALVPSVPKPEHAPSGGDPAAQLQALAAAADDACAGASPSSSPEAAEGAEA
DAAGDRDLLCPICMGLIKDAFLTACGHSFCYMCIVTHLNHKSDCPCCANYLTKAQLYPNF
LLDKVVKKMSARQVAKTASPIDQFRHVVQQGNDMTVKELDSLMTLIAEKKRQMEQQESET
NMQILLVFLHCLRKQKLEELNEIQTDLQYIKDDISSVERHRLDLYRTKERYSMRLRMLLD
EPAASKMWPSPMDKPSSPFVPNSRAPPSTSSPGGLNNRRFDLRAPASHQGHQRRDALASS
DPPNPPLQSGNVIARKRRVQAQFNELQEYYLQRRRTGAQSHRQEDAVTMNREGYHEGLED
FQSVLTTFTRYSRLRVIAELRHGDLFHSANIVSSIEFDRDDELFATAGVSKRIKVFEFST
VVNEPSDVHCPVVEMATRSKLSCLSWNKYSKNVIASSDYEGIVTVWDVQTRQSVMEYEEH
EKRAWSVDFSRTEPKMLVSGSDDCKVKVWCTNQEASAINIDMKANICSVKYNPGSSYYVA
VGSADHHIHYFDLRNPSAPLHVFGGHKKAVSYVKFLSNNELASASTDSTLRLWDVKDNCP
LRTFRGHKNEKNFVGLSVNNEYIACGSETNEVFVYHKAISKPASSHRFLSTDLDDAEDDP
GSYFISAVCWKSDSPTMLTANSQGTIKVLVLAP
NT seq 2082 nt   +upstreamnt  +downstreamnt
atgggcgactcctcggtggcccccgccggcgcgctcgtgccgtcggtgcccaagccggag
cacgcgccgtccgggggcgacccggcggcccagctccaggccctggcggcggcggcggac
gacgcgtgcgcgggcgcctcgccgtcgtcgtcgccggaggcggcggagggggcggaggcg
gatgcagcgggggacagggacctgctctgcccgatctgcatggggctcatcaaggacgcc
ttcctcaccgcctgcggccacagcttctgctacatgtgcatcgtcacgcacctcaaccac
aagagcgactgcccctgctgcgccaactacctcaccaaggcgcagctctaccccaacttc
ctcctcgacaaggtcgtgaagaaaatgtcggcccggcaagttgcgaaaacagcatctccc
attgatcaattccgacatgttgtgcaacagggaaatgacatgacagttaaagagctagac
agccttatgactttgattgctgagaagaagaggcaaatggaacaacaagagtcagagaca
aatatgcaaatattgctagtcttcttgcactgccttagaaagcaaaagcttgaagagttg
aatgagattcaaactgacctgcagtacatcaaagatgatataagcagtgtggagagacat
aggttagatctgtatcgaacaaaagaaaggtactccatgaggctgcgcatgcttttggat
gaacctgctgcatcaaagatgtggccttcgcctatggacaaacctagtagtccctttgtt
cccaactctcgggcaccacctagcacatcatctccaggggggttaaataataggaggttt
gatttgagagcaccggcaagccatcaaggacatcaaagaagagatgcccttgctagctca
gaccctcccaatccccctctacagtcgggtaatgttattgctcggaagaggcgagttcaa
gcgcagtttaacgagcttcaagaatactatttgcaaagacggcgtactggagcgcagtct
cacaggcaggaggatgctgttacgatgaatagagaaggttatcatgaaggtcttgaagat
tttcagtctgtgcttacaacattcactcgatatagtcgcttacgtgtaattgcggaactt
agacatggagatctgttccactcagcaaatattgtatccagtatcgaatttgaccgtgat
gatgagctattcgctactgctggagtctcgaagcgtattaaagtcttcgaattttctaca
gttgttaatgagccatcagatgtccactgtccagttgttgaaatggctaccagatctaaa
ctcagctgccttagctggaacaagtactcaaaaaatgttatagcaagtagtgattatgaa
ggcatagttactgtttgggatgttcaaacccgccagagtgtaatggagtatgaagagcat
gagaaaagagcatggagtgttgatttttcacgtacagagcccaagatgctagtatctggt
agtgatgattgcaaggtcaaagtgtggtgcacaaatcaggaagcaagtgccattaacatt
gatatgaaggcaaatatttgctctgttaaatataatcctggatcgagctactatgtcgca
gtcggatctgctgatcaccatattcattattttgatttacgaaatccaagtgcacctctc
catgtttttggtgggcacaagaaagctgtttcttatgtgaaattcttatcaaataatgag
cttgcatctgcatcgaccgatagcacgttacggttatgggatgtcaaggacaattgccca
ctaaggactttcagagggcacaaaaatgagaagaacttcgtaggactatctgtaaataac
gaatatattgcttgcgggagtgaaacaaatgaggtttttgtttaccacaaggctatctca
aaacctgcttccagccatcggtttctatccacggacctggacgacgccgaggatgatccc
gggtcttatttcatcagcgctgtctgctggaagagcgatagccctactatgctaactgct
aacagccaggggaccattaaagttctcgtgctcgccccttga

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