Triticum dicoccoides (wild emmer wheat): 119329220
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Entry
119329220 CDS
T07278
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH9-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119329220
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119329220
03041 Spliceosome [BR:
tdc03041
]
119329220
03009 Ribosome biogenesis [BR:
tdc03009
]
119329220
03016 Transfer RNA biogenesis [BR:
tdc03016
]
119329220
Enzymes [BR:
tdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119329220
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
119329220
Spliceosome [BR:
tdc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119329220
Complex C
U4/U6.U5 tri-SnRNP related factors
119329220
Ribosome biogenesis [BR:
tdc03009
]
Eukaryotic type
Pre-60S particles
Helicases
119329220
Transfer RNA biogenesis [BR:
tdc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
119329220
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DSHCT
MTR4_beta-barrel
DEAD
MTR4-like_stalk
DEXQc_Suv3
ResIII
Helicase_C
ATPase_2
Motif
Other DBs
NCBI-GeneID:
119329220
NCBI-ProteinID:
XP_037458128
LinkDB
All DBs
Position
7A:3791237..3798179
Genome browser
AA seq
997 aa
AA seq
DB search
MEAALKRKAAEAPAAVPDPPLKAPRADAAPAPPPPAAAERVACLHDVSYPEGYDASASGP
RVVAGGGEGAAPAKTFPFPLDPFQSEAIRCLDNGESVMVSAHTSAGKTVVALYAIAMSLR
NQQRVIYTSPIKALSNQKYREFKEEFSDVGLMTGDVTIEPNASCLVMTTEIWRSMQYKGS
EVMREVAWVIFDEVHYMRDRERGVVWEESIVMAPKNSRFVFLSATVPNAKEFADWVAKVH
KQPCHIVYTDYRPTPLQHYVFPAGGDGLYLVVDENGKFREDSFQKSLNVLAPATGSDKKR
ENGKRQKGLVSAGKTNEESDIFKMVKMIIQRQYDPVILFSFSKRECEFLAMQMAKMDLNG
DDEKVNIETIFWSAMDLLSDDDKKLPQVSNMLPLLKRGIGVHHSGLLPILKEVIEILFQE
GLIKCLFATETFSIGLNMPAKTVVFTNVRKFDGDRFRWLSSGEYIQMSGRAGRRGIDQRG
ICILMVDEKMEPSTAKMMLKGGADSLNSAFHLSYNMLLNQLRSEDGDPEKLLRHSFYQFQ
ADRALPDLEKQVRELEIERSSMVIEDEESVKDYYDLLQQYRTLKKDVRDIVLSPKYVLPF
LQSGRLVRVQYSTDESTFSIDENVSWGIIINFEKVKTNPEERRPEDCDYTVDVLTRCSVI
KDISGKKTMKVIPLKSRGEPVVISLPLSQIDGLSSVRMYIPKDLLPVEARENTLRKVEEV
LSRFSKDGVPLLDPEEDMEVKSSSYRKATRRIEALESLFEKHDIRNAPHIQQKLKVLHAK
QEIKAKIKSIKKTMRASTALAFKDELKARKRVLRRLGYITSEDVVEIKGKVACEISSADE
LTLTELMFSGTLKDATVEQMVALLSCFVWQEKLQDAPKPREELDLLFYQLQETARRVANL
QLECKIQIDVESFVNSFRPDVMEAVYSWARGSKFHQIMEMTQVFEGSLIRAIRRLEEVLQ
QLILASQSIGETQLEAKLEEAVSKIKRDIVFAASLYL
NT seq
2994 nt
NT seq
+upstream
nt +downstream
nt
atggaggccgccctcaagcgcaaggccgcggaagcccccgcagccgtgcccgacccccct
ctcaaggcgccgcgcgcggacgccgctcccgctcccccgccgccggccgccgccgagcgc
gtcgcctgcctgcacgacgtctcctaccccgagggctacgacgcgtccgcctccggcccg
cgcgtcgtcgccggcggcggcgagggcgcggccccggccaagacgttccccttcccgctc
gaccccttccagtccgaggccatccgctgcctcgacaacggcgagtccgtcatggtttcg
gcgcacacgtcggcggggaagacggtggtggcgctgtacgcgatagccatgtccctgcgc
aaccagcagcgggtcatctacacctcgcccatcaaggccctcagcaaccagaagtacagg
gagttcaaggaggagttctccgacgtcggcctcatgactggggacgtcaccatcgagcca
aacgcctcctgcttggtcatgaccacggagatttggcgcagcatgcagtataaggggtcc
gaggtgatgagggaagtcgcctgggttatcttcgatgaggtgcattacatgcgtgacagg
gagaggggagtggtgtgggaggagagtattgtgatggctcccaaaaactcgcggtttgtg
ttcctctcggcaactgtacccaatgccaaggagtttgctgattgggtagccaaggtacat
aagcaaccttgtcatatagtatacaccgattaccgacctacacccctccagcactatgta
tttcctgctggaggcgatggcttatacctggtcgttgatgaaaatggcaagttcagagag
gatagttttcagaaatctctgaatgtccttgcccctgctactggcagtgacaagaagagg
gaaaacgggaagcggcaaaagggcctcgtctcggcaggcaaaactaacgaagaaagcgac
atattcaagatggtgaagatgataattcagcgtcaatatgaccctgtgatacttttcagc
tttagcaaaagagagtgtgaatttcttgctatgcagatggccaagatggacttgaatgga
gatgatgagaaagtgaacattgaaaccattttttggagtgccatggatttgctttcagat
gatgacaaaaagcttccccaggtttcgaatatgcttcccttattgaaacgcggcattgga
gtacatcattctggtttgttgcccattttaaaggaagtgattgagatacttttccaagag
ggcctcatcaagtgtctgtttgccacagagacattcagtattggattgaacatgcctgca
aagactgttgtgtttaccaatgtacgcaagtttgatggagatcgattcagatggttgtca
agtggagagtacatccagatgagcggccgtgccggtcgtcgaggtattgatcagcgtggt
atctgtatattgatggtagatgagaaaatggaaccctcaactgccaaaatgatgctgaaa
ggaggtgctgatagtttgaacagtgctttccatttgagctacaacatgttgttgaatcaa
ctgcgctctgaggatggtgatccagaaaagcttcttcggcattcattctaccaatttcaa
gcagatagagctctccctgatctcgagaagcaagtcagggaactggaaatagaaagaagt
tccatggttattgaagacgaggagagcgtgaaggattactatgatctcttacagcagtac
agaactttaaagaaggatgtccgtgatattgtactttcgccgaaatatgttctgcctttc
ttgcaatccggaaggcttgttcgtgttcaatacagtacagatgagtccaccttctctatt
gacgaaaatgtgtcgtggggaattataataaattttgagaaggtgaaaaccaatcctgaa
gaaagaaggcccgaggattgtgattacactgttgatgtcctcaccagatgttctgtaatc
aaggacataagtggaaagaaaacaatgaaggttattcctctcaaatcccgtggagaaccg
gttgttatttcgttgccactttctcagattgatggactgagtagtgttcggatgtacata
cccaaggatcttttgcctgtagaagctcgagaaaacacattgaggaaagttgaagaagtg
ctttcaagattttctaaagatggggttcctctattggatccagaagaagatatggaagta
aaatctagctcctaccggaaagctaccagaagaatagaagctctggagagcttgtttgag
aagcatgacatccgtaatgcaccccatatccaacagaagctgaaggtcttgcatgctaag
caagaaataaaagccaaaataaagtccataaagaaaacaatgcgggcctcgactgcttta
gcctttaaggacgagctcaaggcacgaaaacgagttcttcgtaggctgggatatatcacc
agtgaggatgtagtcgaaataaagggcaaagtggcatgtgagatcagctcagccgacgaa
ctgacattgaccgagcttatgttcagtggtactttgaaggatgctactgtggagcagatg
gtggctctgctctcttgctttgtctggcaggagaagcttcaggatgccccaaagccaagg
gaagagctcgacctgctcttctaccagttgcaagagacggcacgaagggtcgcgaacctc
cagcttgaatgcaagatccagatcgatgttgagagtttcgtgaactccttccgccccgac
gtgatggaggccgtgtactcgtgggccagagggtccaagtttcaccagatcatggagatg
acacaggtgttcgaaggcagcctgatcagggccatcaggcggctggaggaggtccttcag
cagctgatcctggcgtcccagtcgatcggtgagacccagcttgaagccaagctcgaggag
gcggtcagcaagattaagagggatatcgttttcgctgcgtccttgtacttgtga
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