KEGG   Triticum dicoccoides (wild emmer wheat): 119329538
Entry
119329538         CDS       T07278                                 
Name
(RefSeq) histone deacetylase 1-like isoform X1
  KO
K06067  histone deacetylase 1/2 [EC:3.5.1.98]
Organism
tdc  Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03082  ATP-dependent chromatin remodeling
tdc03083  Polycomb repressive complex
Brite
KEGG Orthology (KO) [BR:tdc00001]
 09120 Genetic Information Processing
  09126 Chromosome
   03082 ATP-dependent chromatin remodeling
    119329538
   03083 Polycomb repressive complex
    119329538
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03036 Chromosome and associated proteins [BR:tdc03036]
    119329538
Enzymes [BR:tdc01000]
 3. Hydrolases
  3.5  Acting on carbon-nitrogen bonds, other than peptide bonds
   3.5.1  In linear amides
    3.5.1.98  histone deacetylase
     119329538
Chromosome and associated proteins [BR:tdc03036]
 Eukaryotic type
  Histone modification proteins
   HDACs (histone deacetylases)
    Class I HDACs
     119329538
   HDAC complexes
    Sin3A-HDAC complex
     119329538
    BRAF-HDAC complex
     119329538
    REST complex
     119329538
    SHIP complex
     119329538
    MiDAC complex
     119329538
   Polycomb repressive complex (PRC) and associated proteins
    Noncanonical PRC1 (PRC1.6)
     119329538
  Heterochromatin formation proteins
   Other heterochromatin formation proteins
    119329538
  Chromatin remodeling factors
   NuRD complex
    119329538
SSDB
Motif
Pfam: Hist_deacetyl
Other DBs
NCBI-GeneID: 119329538
NCBI-ProteinID: XP_037458496
LinkDB
Position
7A:complement(549610100..549620584)
AA seq 520 aa
MDISAGGGGNSLPTTGADGSKRRVCYFYDAEVGNYYYGQGHPMKPHRIRMTHALLAHYGL
LDEMQVLKPHPARDRDLCRFHADDYVSFLRSVTPETQQDQIRALKRFNVGEDCPVFDGLY
SFCQTYAGGSVGGAVKLNHGHDIAINWAGGLHHAKKCEASGFCYVNDIVLAILELLKYHQ
RVLYVDIDIHHGDGVEEAFYTTDRVMTVSFHKFGDYFPGTGDIRDVGHSKGKYYSLNVPL
DDGIDDESYQSLFKPIMGKVMEIFRPGAVVLQCGADSLSGDRLGCFNLSIKGHAECVRFM
RSFNVPVLLLGGGGYTIRNVARCWCYETGVALGHELTDKMPLNEYYEYFGPDYTLHVAPS
NMENKNTHRHLDEIRSRLLENLTKLRHAPSVQFQERPPEAEQPEQDEDQENPDERHHADS
DVEMDDAKPLEDSERRTSTQGARVKRESAETEVTTDQQDGNGVASEQVRGPEPVADGVGS
SKQNPPIDASPMAIDGPAVVRAEPERSNKLQEQQALHQKP
NT seq 1563 nt   +upstreamnt  +downstreamnt
atggacatctcggccggcggcggcggcaactcgctgcccaccaccggcgcggacggctcg
aagcgccgcgtctgctacttctacgacgcggaggtgggcaactactactacgggcagggc
cacccgatgaagccgcaccgcatccgcatgacccacgccctgctcgcccactacggcctc
ctcgacgagatgcaggtgctcaagccgcaccccgcccgcgaccgcgacctctgccgcttc
cacgccgacgactacgtctccttcctccgctccgtcaccccggagacgcagcaggaccag
atccgcgccctcaagcgcttcaacgtcggcgaggactgccccgtcttcgacggcctctac
agcttctgccagacctacgccggcggctccgtcgggggcgccgtcaagctcaaccacggc
cacgacatcgccatcaactgggccggcggcctccaccacgccaagaagtgcgaggcctcc
ggcttctgctacgtcaacgacatcgtcctcgccatcctcgagctcctcaaataccaccag
cgtgttctgtatgtcgatatcgatattcaccatggggacggcgtggaggaggcgttttac
accacggacagggtgatgactgtctcattccacaagtttggggattatttcccagggaca
ggagacattcgtgacgttgggcactccaaggggaagtattattccctgaatgtcccgttg
gatgacggcatcgacgacgagagctatcaatcgttgttcaagccgatcatgggtaaagtt
atggagattttccgccccggcgcggtggtactccagtgtggagcagattccttatccggt
gacaggttgggctgcttcaacctatccattaaggggcacgcagagtgcgtgagattcatg
aggtccttcaatgttccggtgttgctgcttggtggtggtggttataccataagaaatgtt
gcacgatgttggtgctatgagacgggagttgcacttggtcatgagctaactgacaagatg
ccgctaaatgagtattatgagtattttggcccagattatactcttcatgttgcaccaagt
aatatggagaacaaaaacacacaccggcatttggatgaaataagatcaagacttctcgaa
aatcttacaaaactccggcatgctcctagtgtgcagtttcaagagcgacctcctgaggcc
gagcaaccagagcaagatgaggatcaagagaatcctgatgaaaggcatcatgctgactct
gatgtggaaatggatgatgccaagcctctggaggactctgaaaggagaaccagtactcag
ggtgcgagagttaagagagaatctgctgaaactgaggtgacaacagatcagcaggatggt
aacggagtagcttcagaacaagtaaggggcccagaacctgtggctgatggagttggttcc
tcaaaacaaaaccctcctattgatgcaagtccgatggccatagacgggccagctgttgtc
agggctgaaccagagaggtcaaacaaattacaggaacaacaagcattgcatcagaaacca
tga

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