Triticum dicoccoides (wild emmer wheat): 119329687
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Entry
119329687 CDS
T07278
Name
(RefSeq) zinc finger CCCH domain-containing protein 45-like
KO
K14404
cleavage and polyadenylation specificity factor subunit 4
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119329687
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdc03021
]
119329687
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119329687
Transcription machinery [BR:
tdc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119329687
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage and polyadenylation specificity factor (CPSF) complex
119329687
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
YTH
zf_CCCH_4
zf-CCCH
Torus
zf-CCCH_2
zf-CCCH_RBM22
zf-CCCH_4
zf-CCCH_3
zf-CCCH_12
Motif
Other DBs
NCBI-GeneID:
119329687
NCBI-ProteinID:
XP_037458654
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All DBs
Position
7A:complement(666248561..666253523)
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AA seq
650 aa
AA seq
DB search
MDDGDGGLSFDFEGGLDTGPAAGGLALSSADAGATGGGGGGDGGGHGRGRGRGSYRQTVC
RHWLRGLCMKGEACGFLHQFDKARMPVCRFFRDYGECREPDCAYKHSYDDVKECNMYKMG
FCPNGPNCRYKHVKLPGPPPPVEEVLAKILQMRSSNFNKFNQHRNNNYNQQGDRPRPPPG
SGLPNQNSTDNASTMQPAAGQQAQTMNQQPQQKQQQVQQQQKPNTNDQVQGVPNGSSNQP
TRLATPLPQGSSRYFIVKSCNRENLEISVQQGIWATQRSNEAKLNEAFESMDNVILIFSI
NRTRNFQGCAKMTSRIGGYIGGGNWKSANGTAHYGRNFSLQWLKLCELSFQKTHHLRNPY
NDNLPVKISRDCQELEPFIGEQLASLLYLEPDSELTAMLVAAEAKREEEKAKGVSADEAA
DNQDIVLFEDNEEEEEEESEEEDENNGQESQGRGRGRGMMWPPQMQMPRGPMMGPRGFPP
NMMGDFGGGFGFGMPDPFGMPRGFPPFGGPRFPGDFPRGPMPGMVFPGRPPQPGGMFPMG
LEMMMGPGRGPLMGMGGPGRPNRPIGMAPFMPPPPPRPVKRDQRRPGGDNRGDRYETGSD
QGSRGHDNNAGNSGADGNRSQSGDRFGRSAFRDDDSESDEEAAPRRSRKR
NT seq
1953 nt
NT seq
+upstream
nt +downstream
nt
atggacgacggcgacggcggtctcagcttcgatttcgagggcggcctcgacacgggccca
gcggcgggcgggctagcgctgtcctcggccgacgccggcgcgaccggcggcggcggcggc
ggagatgggggcgggcacgggcgaggccgcgggcgcggcagctacaggcagacggtgtgc
cggcactggctgcgcgggctgtgcatgaagggcgaggcgtgcgggttcctccaccagttc
gacaaggcccgcatgcccgtgtgccgcttcttccgcgactacggcgagtgccgcgagccg
gattgcgcctacaagcactcctacgacgacgtcaaggagtgcaacatgtataagatggga
ttttgccctaatggcccaaattgccgatacaagcatgtcaagttacctggaccaccacct
cctgtcgaggaagttctcgcgaagattttgcagatgcggtcttccaatttcaacaagttt
aatcagcacaggaacaataattataatcagcagggagacaggcctcgacctccacctggt
tcaggcttacctaaccaaaattcgacagacaatgcttcaacaatgcaaccagctgctggg
caacaagctcaaacaatgaatcaacagccccaacagaagcagcagcaggtgcagcagcag
cagaagccaaatacaaacgaccaggttcaaggtgttccaaatggctcctctaatcaaccc
accagacttgcaacacccctcccgcaagggtcgtctaggtacttcattgttaagagttgc
aatcgggagaacctggaaatatcagttcagcagggaatctgggctactcaaaggagtaat
gaggctaaactaaatgaagcttttgaatccatggacaatgttattttaatattctcaatc
aatagaacacgtaatttccagggttgtgcaaagatgacttctaggattggtggctacatt
ggtggcggaaactggaaatctgctaatggaacagcacattatggtcggaacttctcacta
cagtggcttaagctttgcgaattgtcgtttcagaaaactcatcatcttcgcaacccatac
aatgacaatctccctgtcaagatcagtcgagattgccaggaattagaacctttcattggt
gagcaattggcttctctgctttatctggagccagatagtgaacttacggctatgctagtt
gcagcagaggccaagagagaagaggaaaaggcgaagggagtcagtgccgacgaagcagct
gacaaccaagatattgtgctgtttgaggacaatgaagaagaggaggaagaggaaagtgag
gaggaagacgaaaacaatggccaagaatcccagggaaggggtcggggaaggggaatgatg
tggccgcctcagatgcagatgccacgtggaccaatgatgggaccgcgcggcttccctccc
aacatgatgggcgattttggtggtggtttcggctttggcatgcccgatccgttcggcatg
ccgcgtggcttcccaccattcggtggcccaaggttccccggtgacttccccagaggtccc
atgcctggcatggtcttccccggaaggcctccgcagcccggcggcatgtttcccatgggc
ctcgagatgatgatgggccccggccgagggccgctcatgggaatgggcgggccaggacgg
ccgaaccgccccatcggcatggcccccttcatgccgccgccgccaccccgtcccgtgaaa
cgggaccagaggaggccgggtggcgacaacaggggtgacaggtacgagacagggtctgac
caggggagcaggggccatgacaacaatgccggcaactccggagcagacgggaacaggtcc
cagtccggggacaggtttggcaggagcgccttccgggacgacgacagcgagagcgacgag
gaggcggcacccaggcggtcaaggaagcgatag
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