Triticum dicoccoides (wild emmer wheat): 119330439
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Entry
119330439 CDS
T07278
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH10-like
KO
K12818
ATP-dependent RNA helicase DHX8/PRP22 [EC:
5.6.2.6
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119330439
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tdc03041
]
119330439
Enzymes [BR:
tdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119330439
Spliceosome [BR:
tdc03041
]
Complex C
Other components
Step II factors
119330439
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
WHD_HA2
DEAD
AAA_22
AAA_19
nSTAND_NTPase5
nSTAND3
FtsK_SpoIIIE
ATPase
SLFN-g3_helicase
AAA_30
T2SSE
AAA_16
Motif
Other DBs
NCBI-GeneID:
119330439
NCBI-ProteinID:
XP_037459440
LinkDB
All DBs
Position
7A:116800119..116812100
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AA seq
713 aa
AA seq
DB search
MPAMASFRARASAPAPEMPSFSSGASPQKQQHNARRKQLIRQQRKSLPIASVEKRLVDEV
RKNDTLIVVGETGSGKTTQLPQFLYDGGFCQDGKVIGITQPRRVAAVTVAKRVAEECNDQ
LGRKVGYSIRFDDSTSNATRIKYMTDGLLLREALLDPLLSKYSVIVVDEAHERTVHTDVL
LGLLKKVQHSRSLHANKNGKISDRPDHSQSSTLKACQGIKIAPLKLIIMSASLDAKCFSD
YFGGAKAVHIQGRQYPVDTLYTYQPESDYLDATLVTIFQIHLEEGPGDILAFLTGQEEIE
SLERLIQERARQLPADSSKIWITPIYSSLPSEQQMNAFNPAPSGARKVVLATNIAETSVT
IPGIKYVIDPGMVKARAYNPVTGMESLIIIPVSKAQALQRSGRAGREGPGKCFRLFQECE
FDKLAESTIPEIKRCNLANVVLQLKALGIDDIIGFDFMEKPSRTSILKSLEQLILLGALT
DDYKLSDPVGKQMARLPLDPMYSKALIVSSEFKCLEEMLIVVSMLSVESIFFTPREKLEE
ARAARKSFESSEGDHITLVNVYRAAAECLEKSKNANAKEKTMEKALNRWCFENFINYRSL
RHARDVHSQIQGHVQQMGLNLSSCGDDMVQFRRCLTAAFFLNAAMRQPDGSFRALATGQS
VQMHPSSVLFRTKPDCVIFNELVRTTQNYVKNLTRIDPLWLAELAPQYYATED
NT seq
2142 nt
NT seq
+upstream
nt +downstream
nt
atgccagccatggcgagcttcagggcccgggcgtctgcaccagcacccgagatgccgtcc
ttctcctccggtgcttctccgcagaagcagcagcataacgcaaggaggaagcagctgatt
cgtcagcagaggaagtcgcttcccatcgcgtcagtggagaaaagacttgtcgatgaggtg
aggaagaatgacacgctgattgttgttggcgagaccggtagtggcaaaacgactcagttg
ccacagtttttgtatgatggtgggttttgtcaggatggaaaagtgattggcatcactcag
cctcgaagagttgcagctgtgacagtagcaaagcgtgtcgccgaggaatgcaatgatcag
ttgggcagaaaggttggatactctataagatttgatgattccacatctaatgcaacaagg
attaagtacatgaccgatggtttgcttctaagggaagcccttttggatccactcttgtct
aagtatagtgttatagttgttgacgaggcccacgaaagaactgtccatactgatgtattg
ctgggtttgttgaaaaaagtgcagcattcccgatctcttcatgcgaataaaaatggaaag
atttctgacagaccagatcactctcaatcttctaccctgaaggcatgccagggaataaag
attgcacctctaaagctgattattatgtctgccagtctggatgcgaagtgtttttctgat
tattttggtggcgctaaagctgtacatattcaaggacggcaataccccgtcgacacactg
tatacttatcagcctgagtcggattatctagatgctacactagttacgatctttcagatc
catttggaggaaggacctggagacattcttgcatttttaactggtcaagaggagattgaa
tccctagagaggcttattcaagagcgtgctcgtcaacttccagcagatagtagcaagata
tggattacacctatctactcgtctcttccatcagaacagcaaatgaatgcatttaaccca
gcaccttctggagcccggaaggtagttctagcaacgaatattgcagagacttctgtaaca
atacctggtattaaatatgttattgatcctggtatggtcaaagcacgcgcctacaatcct
gtaactggaatggagtccctaatcatcattcctgtctctaaagcacaggctcttcaaagg
agtggccgtgctggacgtgaggggccagggaagtgctttcggttgttccaagaatgtgag
ttcgataaactggcggaatcgactattcctgagattaaacgatgtaacctcgcaaatgtt
gtactacaactcaaagctcttgggattgatgacatcataggtttcgattttatggagaaa
ccatcaaggacgtccattttgaaatcattggagcaattgattttactaggagctttgact
gatgattataagctgtcagatccagtgggtaaacagatggctaggctgcctttagatccc
atgtactccaaggcattgattgtgtcgagtgaattcaagtgcttggaagaaatgttgatt
gttgtttctatgctttcagtggagtcaattttcttcaccccacgtgagaagttggaagag
gcaagagctgctaggaagagttttgaaagctctgaaggagaccatataactttggtgaat
gtatatcgagctgccgcagaatgcttggaaaagagcaagaacgcaaatgctaaagaaaag
acaatggaaaaggctttgaacagatggtgcttcgaaaacttcatcaattatcgatcttta
agacatgctcgtgatgttcacagccaaatccagggtcatgtccaacaaatggggcttaac
ctgtcatcatgtggagacgacatggtccagttccggaggtgcctcaccgctgccttcttc
ctgaacgcagcaatgcgacagccagatggatcattcagggctctcgcgacggggcagagc
gtgcagatgcacccttcgtcggtgctgttccggaccaagccggactgcgtcatcttcaac
gagctggtccggacgacgcagaactacgtcaagaacctcacccggatcgacccgctgtgg
ctggccgagctcgccccgcagtactacgctaccgaagactag
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