Triticum dicoccoides (wild emmer wheat): 119332253
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Entry
119332253 CDS
T07278
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A-like
KO
K12856
pre-mRNA-processing factor 8
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119332253
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tdc03041
]
119332253
Spliceosome [BR:
tdc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
119332253
Complex C
U5 SnRNP specific factors
119332253
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
119332253
NCBI-ProteinID:
XP_037461335
LinkDB
All DBs
Position
7A:complement(87945378..87955283)
Genome browser
AA seq
2350 aa
AA seq
DB search
MAAAPPPPGTAGAGLPPPPPPPAAAPPQAGQPLTPAELEAQLVEKARKWHQLNSKRYGDK
RKFGFVEAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFVPHAVYKLLENMPM
PWEQVRHVKILYHITGAITFVNEIPWVVEPIYLAQWGSMWIMMRREKRDRRHFKRMRFPP
FDDEEPPLDYADNLLDVEPLEAIQLELDPEEDGAVYNWFYDHNPLVKTNFINGPSYRKWN
LSLPIMATLYRLAGQLLSDLTDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKG
DEDWNEFNDINKLIIRQPLRTEYRIAFPHLYNNRPRKVRLCIYHTPMIMYIKTEDPDLPA
FYYDPLINPITSTSKVDRREKKASEDDDEDDFSLPEGVEPLLNRTPLYTDTTAAGISLLF
APRPFNMRSGRTRRAEDIPLVSEWFKEHCPPAYPVKVRVSYQKLLKCYVLNELHHRPPKA
QKKKHLFRSLQATKFFQSTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKP
VKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYIFSHVG
QLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVP
LLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKA
RTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGAT
VDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIP
FPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLL
TQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWVKPADSE
PPPLLVYKWCQGINNLQDIWDTSDGQCVVMLQTKFEKFFEKIDLTLLNRLLRLVLDHNIA
DYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFIVQYYGLVLDLLLLGLTRASEIAGPPQ
MPNEFLTYTDTKVETRHPIRLYSRYIDKVHIMFRFTHEEARDLIQRYLTEHPDPNNENMV
GYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFVSVYSKDNPNLL
FSMSGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAIAFLRVDDEHMKVFENRVR
QILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNS
KMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTHFRSGMSHEEDQLI
PNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQK
DRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGIL
EHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRA
NVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESVVMDLCQVLDQELDALE
IETVQKETIHPRKSYKMNSSCADVLLFAAHRWQMSKPSLVSESKDVFDQKASNKYWIDVQ
LRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPL
LQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNV
YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEV
AALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDL
ILKATEPQMVLYNIYDDWLKSISSYTAFSRLVLILRALHVNNEKAKMLLKPDKTIVTEPH
HIWPSLTDEQWLKVECALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEIAPPSQQRQQ
IAEIEKQSRETNQVTAQTTRTVNVHGDELIVTTTSPYEQAAFASKTDWRVRAISATNLYL
RVNHIYVNSDDIKETGYTYIMPKNILKKFICIADLRTQVAGFLYGLSPQDNPQVKEIRCI
SIPPQHGTHQMVTLPSNLPEHEFLADLEPLGWMHTQPNEAPQLSPQDLTSHAKILENNKQ
WDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWARGNKDNGSNPQGYLPTHYEKVQMLLSD
RFLGFYMVPDNAPWNYNFMGVKHDPLMKYSMKLGTPRDFYHEDHRPTHFLEFSNIEEGEV
AEGDREDTFS
NT seq
7053 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgcgccccctcccccgggcacggccggcgcgggcctgcccccgccccctcct
ccgccggccgccgcgcccccgcaggccggccagccgctcaccccggcggagctcgaggcg
cagctcgtcgagaaggcccgcaagtggcaccagctcaactccaagcgctacggcgacaag
cgcaagttcggcttcgtcgaggcgcagaaggaggacatgccccccgagcacgtccgcaaa
atcatcagggaccatggggacatgtcctcgaagaagtacaggcatgacaagcgtgtttat
cttggagcactcaaatttgtgcctcatgctgtttacaaactactggagaatatgccgatg
ccctgggaacaagttcgccatgttaagatcttgtaccatatcactggcgccataaccttc
gtaaacgagatcccatgggtagttgagcccatttacttggcgcagtggggctctatgtgg
atcatgatgcgaagggagaagagagataggcggcatttcaagagaatgcgttttccacca
tttgatgatgaggaacctccactagattatgctgataatttgttggatgttgaaccactg
gaggctatacaattggagttggatccagaggaagatggagctgtgtataactggttttat
gatcacaatcccctcgtgaagaccaactttataaatggtcccagctataggaagtggaat
ctgtctcttccaataatggcaacactttatcgcctcgctggtcaacttttgtcagacttg
actgatcggaattatttctatttgtttgacatggagtctttctttactgccaaagcactt
aacatgtgcatcccaggtggtccaaagtttgagccattgtaccgtgatatggagaagggg
gatgaggactggaatgaatttaatgacatcaataaactcatcatccgtcaaccacttcgg
accgagtacagaattgcgttcccccacctgtacaataacaggccaaggaaagtgagactt
tgcatatatcatactcctatgataatgtatatcaagacagaggatccagatctgcctgca
ttttattatgatcctctgataaatccgatcacttcaaccagcaaggttgatcgtcgggag
aagaaagcaagtgaagatgacgacgaagatgactttagtctccctgagggcgtggagcct
cttttgaaccgaactccactttacactgacacgacagctgccggcatttcattgcttttt
gctccaaggccttttaacatgagatctggtagaacacgccgtgctgaggatatccctctt
gtatctgagtggttcaaagagcactgtccaccagcgtatccagttaaggtccgggtgagc
taccagaagctgctgaagtgctatgtgctcaatgagctacatcataggcctcctaaagca
cagaagaagaaacatctgttccgttcactgcaagcaacgaagttcttccaaagtacagag
cttgattgggcagaagctgggctgcaagtttgcaagcagggctacaacatgcttaacttg
ttgattcacaggaagaatctgaactatcttcacttggactacaatttcaatttgaagcct
gtgaagacactcacaacaaaagagagaaagaaatctcgttttggaaatgctttccacttg
tgtcgtgagattcttcgacttacgaagctggttgttgatgcaaacatccagtttcgcttg
ggaaatgttgacgcctttcagttggccgatggtctgcaatacatattctcccatgttggt
cagttgaccggtatgtacagatacaagtatcgtctgatgcggcaaattaggatgtgcaaa
gatctgaaacacttgatatactatcgtttcaacactggtcctgttggaaaaggacctggc
tgtggtttttgggctcctatgtggagagtgtggctgttcttccttcgtggcattgtgccc
ttgcttgaaaggtggctaggtaatttgctggccaggcagtttgaaggtcgccattcaaaa
ggagttgctaaaacagtaaccaagcagcgtgtcgagtctcactttgatctggaacttcga
gctgcagttatgcatgatgtccttgatgctatgccagagggcatcaagcaaaacaaggcc
aggactatactgcagcatcttagtgaggcatggcgctgctggaaggcaaatatcccctgg
aaggtccctggcctgccagttcctattgagaacatgatactccgttatgtgaagtccaag
gctgattggtggacaaatgtcgctcactacaatcgtgagcgtatccggcgtggtgctaca
gttgacaagactgtctgccgcaaaaatcttggaaggttaactcgtttgtggctgaaggca
gagcaagagaggcaacacaactacttgaaagacgggccgtatgtgacacctgaagaagca
gttgctatttatacaaccacggtccattggctggagtcaaggaagttctcaccgattcca
tttcccccactctcatacaagcatgacaccaaacttcttatattggcactggaaaggcta
aaagagtcatacagtgtggcagtaagattaaatcaactgcagcgagaggaactgggttta
atagagcaagcatatgataacccacatgaagctttgtcaaggataaaacgtcatcttctt
actcagcgtgcttttaaagaagttggtattgagtttatggatctgtacagctacctgatc
ccggtatatgaaattgagcctcttgagaaaattactgatgcataccttgaccaatacttg
tggtatgaaggggataaacgccacctcttcccaaattgggtaaagcctgctgattcagaa
ccacctcctctacttgtttacaagtggtgccaaggtataaataatttgcaggacatatgg
gacactagcgatgggcagtgtgttgtgatgctgcagacaaaatttgagaagttctttgaa
aaaattgatctgactctgttgaacaggcttcttcggttggtcttggaccataacatcgct
gattatgtcactgcaaagaacaatgttgtgctgtcttacaaggatatgagtcacacaaat
tcttatgggcttattcgaggtcttcagtttgcatcttttattgtgcagtactatgggctg
gtgctggatctcctacttcttggtttaacacgagctagtgagattgcagggccgcctcag
atgccaaatgagttccttacatacactgacactaaagttgagacaaggcatcccatcagg
ctgtattctcgatatattgataaggtgcatataatgttccggttcactcatgaagaggca
agggatttgattcagcggtacttgacagagcatcctgatcctaataatgagaacatggtc
ggttacaacaacaagaaatgttggcctagagatgcaagaatgaggctcatgaagcatgat
gttaatctgggaagaagtgtattttgggatatgaagaatcgcctgccaaggagcattact
acattagaatgggagaatggctttgtctctgtatacagcaaggataacccaaacctgctc
tttagcatgtctgggtttgaggtccgtatactgccgaagatacgtatgactcaggaggca
ttcagcaacacgaaggatggagtatggaacttgcagaatgagcagacaaaagaaaggaca
gctattgcatttttgagggttgatgatgaacacatgaaggtgtttgagaaccgtgtcagg
caaatccttatgtcatcagggtcaacgacatttaccaagatagtcaacaagtggaacact
gctctcatcggcctcatgacatatttccgtgaagcaactgttcatacacaggaactactg
gatctgcttgtaaaatgtgaaaacaagatccagactcgcataaagattggcctgaactcg
aagatgcctagcaggtttccaccagttatcttctatacacccaaggaaattggaggtttg
ggtatgttgtcaatgggtcacattttgataccacagagtgatcttaggtatagcaaacag
acagatgttggtgtgacacattttcgaagtggtatgagtcatgaagaggaccagcttatc
cccaacttgtatcgctacatccaaccatgggagagcgagttcattgattctcagcgtgtt
tgggctgagtatgctttgaagaggcaggaagcacaatcgcagaataggcgcttaacactt
gaagatctggaagattcatgggatagaggcataccccgtatcaacactttattccagaaa
gaccgccacactttggcctatgacaaagggtggagagtgcggacagactttaagcagtat
caagtgctgaaacagaacccattctggtggacacatcagcgacatgatggaaagctgtgg
aatctgaataactacagaactgatgtcatccaagcacttggtggtgtggaaggtatcctg
gagcataccttatttaaaggaacatatttccctacttgggagggtttgttttgggagaag
gcttcaggtttcgaggaatcgatgaagtacaaaaagctgacaaatgcacagcgttctggg
cttaatcaaatccccaacagaagatttaccctctggtggtcgccaaccattaatcgtgca
aacgtatatgttggtttccaggttcagctagatctgacagggatattcatgcatggtaaa
attccaaccctgaagatctctctgattcagattttccgtgcacatctttggcagaaggtc
catgaaagtgttgttatggatctttgccaagttctggatcaggagttggatgcgctggag
attgagacagtacagaaggagacaatacatcccaggaagagttacaagatgaacagttca
tgtgcagatgtcctcctttttgctgcacataggtggcagatgtccaaaccaagcttagtt
tctgagtcaaaggatgtctttgatcagaaagcgagtaacaagtactggattgatgtgcaa
ctacgatggggagactacgattcacatgacatagaacgttatacaagagcaaaatttatg
gactacacgacagataatatgtccatctacccttctccgactggagtgatgattggactt
gatctagcttataatttgcactctgcttttggcaattggttccctgggtcaaaacccctc
ctccagcaagcaatgaacaagatcatgaagtcaaatcctgctctgtatgtgctgagggag
agaataagaaagggtcttcagttgtattcatctgaacccaccgaaccatatctgtcttcg
cagaactatggagagatattcagcaatcaaatcatatggtttgtggatgacacgaatgtc
tatcgagttaccattcacaaaaccttcgagggtaacctgaccaccaaacctatcaacggt
gctatctttattttcaatccaagaactgggcaactatttctgaaggtcatccacacaagt
gtatgggcaggacaaaagcgtctagggcagctggccaagtggaaaactgctgaggaggtt
gctgcgttagttcggtctcttcctgtagaagagcagccaaagcaaattattgtgacaagg
aagggtatgttggatccattggaagtccatctgcttgatttccctaacattgttatcaag
ggcagtgagttgcagctgccattccaagcttgcttgaagattgagaagtttggtgatctt
attctcaaggctacggaaccgcagatggttctttataacatatacgatgactggctgaaa
agtatctcgtcctacaccgcattctctcgtcttgtgcttatattacgagcattacatgtc
aataatgagaaggccaagatgttgctgaagcctgacaagacaattgttacggaaccacat
catatctggccatctttgactgacgagcagtggctgaaggtcgaatgtgcactcagggat
ctcattctttctgattatgcaaagaaaaacaacgttaatacttctgcacttacgcaatct
gagattcgtgatataatacttggtgctgaaatagctccaccgtcacagcagaggcaacag
atagctgagattgagaaacagtcccgagagacaaatcaggtaactgcacagacaacaagg
acagttaatgtgcatggagatgagctcatcgtcacaacaaccagtccgtatgagcaagca
gcgtttgcatcgaagacagattggcgtgtcagggccatctctgctacgaacctgtatctc
cgtgtcaaccacatttatgttaactcggatgatataaaggagactggctatacttacatc
atgccaaagaacatattgaagaagttcatatgcatagcagatctacggacacaggttgca
ggtttcctgtatgggctgagtccacaggataatccccaagtcaaggagatcagatgcata
tccattccgccacagcatggaactcaccagatggtgactttgccatcgaatctcccagag
catgagttccttgctgacttggagccgttgggatggatgcatacccagccgaatgaagct
cctcagctatcacctcaggatttgacatcacatgctaaaattttggagaacaacaagcag
tgggatggtgagaagtgcatcattttgacctgcagcttcaccccaggatcgtgctcgttg
actgcgtacaaattgacaccaagtggttatgagtgggcccgtggcaacaaggacaacggg
agcaacccacaagggtacctcccaactcactacgagaaggtccagatgcttctcagcgac
cgcttccttggattctacatggttccggacaacgctccgtggaactacaacttcatggga
gtcaagcacgacccgctgatgaagtacagcatgaagctgggcacaccccgcgacttctac
catgaggaccacaggccgacgcacttcctggagttcagcaacattgaggagggcgaggtc
gctgagggggacagggaggacaccttctcgtag
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integrated database retrieval system
