Triticum dicoccoides (wild emmer wheat): 119333322
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Entry
119333322 CDS
T07278
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119333322
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119333322
03041 Spliceosome [BR:
tdc03041
]
119333322
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119333322
Spliceosome [BR:
tdc03041
]
Complex B
Other components
Prp19-related factors
119333322
Complex C
119333322
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
TPR_14
HAT_PRP39_C
Mad3_BUB1_I
TPR_16
Suf
PPR
TPR_12
ARM_TT21_C
MIT
Motif
Other DBs
NCBI-GeneID:
119333322
NCBI-ProteinID:
XP_037462155
LinkDB
All DBs
Position
7A:complement(158698015..158700309)
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AA seq
764 aa
AA seq
DB search
MEIEVSADDVLSGWLRYLSARRAAPPAKRAAIYERALRALPGSYKLWHAYLTELGDAARA
LPVTHAAHAGLDAAFERALAAGMSRMPRVWHMYASSLLHQRLLTRARRVLDRALRSLPVT
QHHRVWPLHLRLASLPDCPAPTALRVHGRHLQFNPDHAEQFIAFLVSAGRWRDAAHHLAA
AIDDEGFVFVKGTTKRQLLLDLCGLLAQHPEDVAGMPVDAILRGSFRKFPEEAGVLWTCL
ASHYARRGLHGKARDMFEEATTTATTVKDFRMVFDAYLHFEHAMAAAELELGQADTVDIQ
DCWLADRESTDLAMARLERLLERRPELLNSVLLTQNPHDVQAWHERAKIFHKDPARHAAT
YVEAVKAVDPAKATGKPPHTLWLALASMYEDRGTVDCARDVLHRATQANFTAAEHLAAVY
CEWAHMELRHQDPDRAIDLIRRATTPPSTEAMTRAAAAGGEDVRAKLHRCLKLWLVYLDL
MTTHGSLESTCAVYDKMHDLGVVTPLLVLDHATLLEQHGRFEDAFRVYERGVRSFKHPHA
DAIWEAYLTKSVQRHGRSRPERVRDLFQAAALQAPPERKKAVYLRYARFEEDFGLASRAM
KVYEEAAGAVPAGDRLGVYGVYVARATELYGLLKARDVYGQAIVGGGLPDEGARAMCVGF
ADIEIGLGEVARARALYAYAAAFTDPGVCHDFWKRWNDFEVRHGDEGTFREMLRAKRTMA
AVARDGAGARCATGTGGGMVEQGLRRCAGQRLDGARQSKRIRLV
NT seq
2295 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgaggtctcggcggacgacgtcctgtccggctggctgcgctacctgtcggcc
cgccgcgcggcgccgccggcgaagcgcgcggccatctacgagcgggcgctgcgggccctc
cccgggtcctacaagctctggcacgcctacctcacggagctcggcgacgccgcgcgcgcg
ctgcccgtcacccacgccgcccacgccggcctcgacgccgccttcgagcgcgcgctcgcc
gccggcatgtcccggatgccgcgcgtctggcacatgtacgcctcctcgctcctccaccag
cgcctcctcacccgcgcccgccgcgtgctcgaccgcgccctgcggtcgctgcccgtcacg
cagcaccaccgcgtgtggccgctccacctccgcctcgcctccctgcccgactgcccagcc
ccgaccgccctccgcgtgcatggccgccacctccagttcaaccccgaccacgccgagcag
ttcatcgccttcctcgtctctgccggcagatggcgggacgccgcccaccacctcgcggcg
gccatcgacgacgaaggcttcgtgttcgtcaagggcacaacgaagcgccagctcctgctt
gacctgtgtggcctgctcgcccagcacccggaggacgtcgccggtatgccggtggacgca
atcctccgcggcagcttccgcaagttccccgaggaggccggcgtgctgtggacatgtctg
gccagccactacgcgcggagaggcctccatggcaaggcgagggacatgttcgaggaggcc
acaaccaccgcgaccaccgtcaaggacttccggatggtgttcgacgcttacttgcacttc
gagcacgccatggccgccgcggagctcgagctcgggcaagcggacaccgtcgacatccag
gactgctggctcgcggaccgggaaagcacagacttggcgatggcgaggctggagcggctg
ctcgaacgccggccggagctgctcaacagcgtgctgctgacgcagaacccgcacgacgtc
caggcgtggcacgagcgggccaagatcttccacaaggatcccgcgaggcacgccgcgacc
tacgtggaggccgtcaaggccgtggatccggcgaaggcgacggggaagccgccgcacacg
ctctggctggcgctggccagcatgtacgaggaccgtggcaccgtcgactgcgcccgagac
gtgctccacagagccacgcaggcgaacttcacggcggcggagcacctcgccgcggtttac
tgcgagtgggcccacatggagctgaggcaccaggatcccgaccgggccatcgacctcatc
cggcgagcgaccacgccaccgtcgaccgaggccatgactcgcgccgctgctgccggcggc
gaggacgttcgggcgaaactgcaccggtgtctcaagctgtggctcgtgtacctggacctg
atgacaacgcacgggtcgctcgagtccacctgcgccgtctacgacaagatgcacgacctc
ggcgtcgtcacgccattgctggtcctcgaccacgcgaccctcctcgagcagcacgggcgg
ttcgaggacgcgttccgtgtgtacgagcggggcgtcaggtccttcaagcacccgcacgcc
gacgccatatgggaggcgtacctgaccaagtccgtccagcggcacgggaggagcaggccg
gagagggtgcgggacctgttccaggcggccgccctgcaggcgccgccggagaggaagaag
gccgtgtacctcagatacgcgaggttcgaggaggacttcggcctcgcgagccgcgccatg
aaggtgtacgaggaggccgcgggcgccgtccccgccggcgacaggctcggggtctacggg
gtgtacgtcgcgcgggctaccgagctctacggccttctgaaggcgagggacgtgtacggc
caggcgatcgtcggcggcgggctgcccgacgagggcgcgagggcgatgtgcgtcgggttc
gccgacatcgagatcgggctcggggaagttgcgcgcgctcgggcgctgtacgcctacgcg
gcggccttcacggatcccggggtttgccatgatttttggaagcggtggaacgactttgag
gtgcggcacggcgacgagggtacgttcagggagatgctccgcgcgaagaggaccatggcg
gccgttgccagagatggagccggggcgcggtgtgcgaccggcaccggcggcggcatggtg
gagcaggggctgcgccgttgcgcgggacaacgactcgacggtgctcggcaatccaagcgg
atacgcctagtgtag
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