Triticum dicoccoides (wild emmer wheat): 119335740
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Entry
119335740 CDS
T07278
Name
(RefSeq) ERAD-associated E3 ubiquitin-protein ligase HRD1-like
KO
K10601
E3 ubiquitin-protein ligase synoviolin [EC:
2.3.2.27
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc04120
Ubiquitin mediated proteolysis
tdc04141
Protein processing in endoplasmic reticulum
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
04141 Protein processing in endoplasmic reticulum
119335740
04120 Ubiquitin mediated proteolysis
119335740
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04121 Ubiquitin system [BR:
tdc04121
]
119335740
Enzymes [BR:
tdc01000
]
2. Transferases
2.3 Acyltransferases
2.3.2 Aminoacyltransferases
2.3.2.27 RING-type E3 ubiquitin transferase
119335740
Ubiquitin system [BR:
tdc04121
]
Ubiquitin ligases (E3)
Single Ring-finger type E3
Other single Ring-finger type E3
119335740
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
TPR_SYVN1_N
zf-RING_2
zf-rbx1
zf-C3HC4
zf-RING_UBOX
zf-C3HC4_2
zf-C3HC4_3
zf-ANAPC11
FlxA
zf-RING_11
zf-RING_5
zf-RING_Vps41
zf-RING_16
zf-HC5HC2H
U-box_ZFPL1
zf_RING_Vps8_fungal
Motif
Other DBs
NCBI-GeneID:
119335740
NCBI-ProteinID:
XP_037463723
LinkDB
All DBs
Position
7B:complement(163380389..163385645)
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AA seq
491 aa
AA seq
DB search
MIRLQTYAVFSLLATITSVYYAFSSREQFYPAMVYLSTSKICFVLLLNTGLVAMCVAWQL
VKRVFLGTLREAEVERLNEQSWREVVEILFAVTIFRQDFSVSFLAMVAALLLVKALHWLA
QKRVEYIETTPSVPMLSHIRIVSFMLFLLVVDCLFLANSLGSLIQKREASVAIFFSFEYM
ILATSTVSTFVKYVFYVSDMLAEGQWENKAVYTFYLELISDLVHLSLYMLFFIAIFLNYG
VPLHLIRELYETFRNFRIRISDYVRYRKVTSNMNERFPDATPDELDASDVTCIICREEMT
TAKKLLCGHLFHVHCLRSWLQRQHTCPTCRAPIIPPDNGRAASAQQHGAQPGVQPGTGTP
SSGGAPTENVNMRQLKLEAAASAASLYGRSFAYPPVNTLNRHSGPLHATPSTSQSGEAST
STGHPLEPQPSYSRGPVSSITGSGDPGNSLQKAYEKAIRSQIEVLQIQLQMMQQGATAST
TSNENAEQAGK
NT seq
1476 nt
NT seq
+upstream
nt +downstream
nt
atgatccggttgcagacgtacgccgtgttcagcctgctggcgacgataacgtcggtgtac
tatgcgttcagcagcagggagcagttctacccggccatggtctacctctccacctccaag
atatgcttcgtgctgctcctcaacacgggcctcgtcgccatgtgcgtcgcctggcagctc
gtgaagcgcgtcttcctggggacgctccgggaggccgaggtcgagcggctcaacgagcag
tcgtggcgtgaggtcgtggagatcctcttcgcggtcaccatcttccgccaggatttctcc
gtctctttcctcgccatggtcgccgccctgctcctcgtcaaggctctgcactggcttgcg
cagaagagggtcgagtacattgagaccacaccctccgtgccaatgctgtcgcacataagg
atcgtgtccttcatgctattccttcttgtcgtcgactgcctcttcctggcgaactcgctg
gggtcgctgatacagaagcgggaggcatctgttgcaatcttcttttcctttgagtatatg
atactggcaacatcgacagtatcgacattcgtgaagtatgtattctatgtcagcgacatg
ctagcggaaggtcaatgggagaataaagcagtgtatacattttatttggagcttatcagc
gaccttgtgcacttgtctttatatatgctattcttcatagcgatcttcctgaactatggt
gtcccactgcacttgattcgtgagctgtatgagaccttccgcaacttcagaattcgcatt
tcagattatgtgcgctacagaaaggtgacttccaacatgaatgaacgctttccagatgct
acaccagatgagctcgatgcgagtgatgtcacatgtattatttgccgtgaagagatgacc
acagcaaagaagctgctttgtgggcacttgttccatgtacattgtttgaggtcatggcta
cagcgccaacatacttgcccaacatgtagagctccaattatccccccagataatggacgt
gcagcatcagcacaacagcatggagctcaacctggagttcagcctggcactggtactcca
agttcaggaggagcaccaactgagaacgtgaacatgcgtcaattaaaacttgaggctgct
gcttcagctgcttccttgtatgggagatcatttgcttatcctccagtgaacactttgaat
aggcactcaggacctctgcacgctacaccaagtacctcacaatcaggagaagcaagtact
tccactggccatccattagaacctcagccttcttattcacgtggtccagttagttcaata
actggtagcggggaccctggaaattcactacaaaaggcatatgaaaaggctataaggagc
cagatagaggtgttgcaaatccaattgcaaatgatgcagcaaggggccaccgcatcaaca
actagcaacgagaacgctgagcaagccggaaaataa
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