Triticum dicoccoides (wild emmer wheat): 119336881
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Entry
119336881 CDS
T07278
Name
(RefSeq) pre-mRNA-splicing factor syf1 homolog
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119336881
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119336881
03041 Spliceosome [BR:
tdc03041
]
119336881
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119336881
Spliceosome [BR:
tdc03041
]
Complex B
Other components
Prp19-related factors
119336881
Complex C
119336881
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
TPR_14
HAT_PRP39_N
HAT_PRP39_C
Suf
Mad3_BUB1_I
PPR
TPR_12
TPR_16
ARM_TT21
ARM_TT21_C
Motif
Other DBs
NCBI-GeneID:
119336881
NCBI-ProteinID:
XP_037464859
LinkDB
All DBs
Position
7B:complement(123063669..123065999)
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AA seq
776 aa
AA seq
DB search
MEIEVSADDVAYEEDVLRDPFRLSGWLRYLSARRAAPPAKRAAIYERALRALPGSYKLWH
AYLTELGDAARALPVTHAAHAGLDAAFERALAAGMSRMPRVWHMYASSLLHQRLLTRARH
VLDRALRSLPVTQHHHVWPLHLRLASLPDCPAPTAVRVHGRHLQFDPDHAEDFIAFLVSA
GRWRDAAQHLAAAIDDEGFVSVKGTTKRQLLPDLCGLLAQHPEDVAGMPVDGILRGSIRK
FPEEAGVLWTSLASHYARRGLHGKARDVFEEAMTTATTVKDFRMVFDAYLHFEHAMAAAE
LELCQADTVDVQDCWLADRDSIDLAMARLERLLERRPELLNSVLLRQNPHDIQVWHEQAK
IFHKDPARHAATYAEAVRTVDPAKATGKPPHTLWLALAKMYEDRGSVDCARDVLHRATQA
NFTAAEHLAAVYCEWANMELRHQDPERAIDLIRQATTPPSIEATTRAAAAGGEDVRAKLH
RCLKLWLVYLDLMTTHGSLESACAVYDKMHDLGVITPLLVLDHASLLEQHSRFEDAFRVY
ERGVRSFKHPHADAIWEAYLTRFVQRHGKSRPERVRDLFQAAVLQSPPERKKAVYLRYAR
FEEDFGLASRAMKVYEDAANAVPAGDRLGVYEVYVARATELYGLLKARDVYQQAIVGGGL
PDEGARAMCVGFADLEIVLGEVARARALYAYAAAFTDPKVYPEFWKRWNDFEVLHGDEGT
FREMLRVKRTMAAVARDGAGARGEIRTDAGVVEQGLRPCAGQRFDGAQQCKRIRLV
NT seq
2331 nt
NT seq
+upstream
nt +downstream
nt
atggagatcgaggtctcggcggacgacgtcgcgtacgaggaggacgtcctgcgcgatccc
ttcaggctgtccggctggctgcgctacctgtcggctcgtcgcgcggcgccgccggcgaag
cgcgcggccatctacgagcgggcgctgcgagccctccccgggtcgtacaagctgtggcac
gcctacctcacggagctcggcgacgccgcgcgcgcgctgcccgtcacccacgccgctcac
gccggcctcgacgccgccttcgagcgcgcgctcgccgctggcatgtcccggatgccgcgc
gtctggcacatgtacgcctcctcgctcctccaccaacgcctcctcacacgcgcccgccac
gtgctcgaccgcgcgctgcgctcgctgcccgtcacgcagcaccaccacgtgtggccgctt
cacctccgcctcgcctccctgcccgactgcccggccccgaccgcggtccgtgtgcatggc
cgccacctccagttcgatcctgaccacgcggaggatttcatcgccttcctcgtctctgcc
ggcagatggcgggacgccgcccaacacctcgccgcggccatcgacgacgaaggattcgtg
tccgtcaagggcacaacgaagcgccagctactgcctgacctgtgtggcctgctcgcccag
cacccagaggacgtcgccgggatgccggtggacggaatcctccgcggcagcatccggaag
ttccccgaggaggccggcgtgctgtggacaagcctggccagccactacgcgcggagaggc
ctccacggcaaggctagggatgtgttcgaggaggccatgaccacggcgaccaccgtcaag
gacttccggatggtgttcgacgcatacttgcacttcgagcacgccatggccgccgcggag
ctcgagctctgccaagcggacaccgtcgacgtccaggactgctggctcgccgacagggac
agcatagacttggcgatggcgaggctggagcggctgctcgaacgccggccggagctgctc
aacagcgtcctgctgaggcagaacccgcacgacatccaggtgtggcacgagcaggccaag
atcttccacaaggatcccgcgagacacgccgcgacctacgcggaggccgtcaggaccgtc
gatccggcgaaggcgacggggaagccgccgcacacgctctggctggctctcgccaagatg
tacgaggaccgtggcagcgtcgactgcgcccgagacgtcctccacagagccacgcaggca
aacttcacggcggcggagcacctcgccgcggtttactgcgagtgggccaatatggagctg
aggcaccaggatcccgagagggccattgatctcatccggcaagcgaccacgccaccatcg
atcgaggccacgacgcgcgccgctgctgccggcggcgaggacgttcgggcgaaactgcat
cggtgtctcaagctgtggctcgtgtacctagacctgatgacaacacacgggtcgctcgag
tccgcctgtgccgtctacgacaagatgcacgacctcggcgtcatcacgccattgctggtg
ctggaccacgcgtccctcctcgagcagcacagccggttcgaggacgcgttccgtgtgtac
gagcggggcgtcaggtccttcaagcacccgcacgccgacgccatatgggaggcgtacctg
acgaggttcgtccagcggcacgggaagagcaggccggagagggtgagggacctgttccag
gcggccgtcctgcagtcgccgccggagaggaagaaggccgtgtacctcagatacgcgagg
ttcgaggaggacttcggcctcgcgagccgcgcaatgaaggtgtacgaggacgccgcgaac
gccgtccctgccggcgacaggctcggcgtctacgaggtgtacgtcgcgcgggctaccgag
ctctacggccttctgaaggcgagggacgtgtaccagcaggcgatcgtcggcggcgggctg
cccgacgagggcgcgagggcgatgtgcgtcgggttcgccgacctcgagatcgtgctcggc
gaagtcgcgcgcgctcgggcgttgtacgcatacgcggcggccttcacggatcccaaggtt
taccctgagttctggaaacggtggaacgactttgaggtgctacacggcgacgagggtacg
ttcagggagatgctccgcgtgaagaggaccatggcggccgttgccagagacggagcaggg
gcgcggggtgagatccgcaccgacgccggcgtggtggagcaggggctgcgcccgtgcgcc
ggccaacgtttcgacggtgctcagcaatgcaagcggatacgtctagtgtag
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