Triticum dicoccoides (wild emmer wheat): 119337918
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Entry
119337918 CDS
T07278
Name
(RefSeq) polyadenylation and cleavage factor homolog 4-like isoform X1
KO
K14400
pre-mRNA cleavage complex 2 protein Pcf11
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119337918
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdc03021
]
119337918
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119337918
Transcription machinery [BR:
tdc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119337918
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Pre-mRNA cleavage factor IIm (CFIIm)
119337918
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
zf_PCFS4
CID
Pcf11_C
Motif
Other DBs
NCBI-GeneID:
119337918
NCBI-ProteinID:
XP_037466084
LinkDB
All DBs
Position
7B:complement(298256134..298264678)
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AA seq
933 aa
AA seq
DB search
MASAAAAAPVVGQVVERFRARLREEAGEEPGAAAVVGVYKEALAELTFNCKPIITELTII
AGQHAALAARGIADAICARILEVPVEQKLPSLYLLDSIVKNIGREYVEDFATRLQKVFCF
AYREVHPKQHPAMRHLFRTWSQVFPSSVLQGIEDELQFSPSENKCPATTTIPRQSESLSP
RPSHGIHVNPEYLEAQHQLKNGTKVDQLATRGRQMLDVVEDHINGLTTNSLRGFPSTSSK
LQRSMILYTENPDQQETFQSRIGLIRRDMSRSPPPDVLPRNASPKRPLEMPRLSHSVLGH
DPRRLPDRNGWFERQRAFEDSAQRPSMSTLDEEYRKQSARELIDAYGNSQGNDADDRLPK
MQRLESNGMASRSSAQKWLTSEEEEYTWEDMRPTLSQNRNNIPSLPSSETLRAGFPGPNT
GQLDSDIGMRSWRSQAPRPALNLEDRTGHVDIATSRRYPGNFGLHNGAISEYHSSENTLD
PGRILAMSAPPWQQTNGLPLRIQAPQPSSTLNRSALPTDVEMPVKMLATGGPYDAMHVDL
PLTNRSSPAPAPIEWPLHHHSQPPHNTKDTRGATDSLEVRPFIRHGVNSSVFVPRHLYDA
LDRKTVSTGNLAQPPYQHPDLLSSSQQNQGTNFGNQSQPHDVPQFHPHSHSHPPETFRSF
APSMPIAPPQNRFQGQGGSAAVPPVTPLPNTFSVTPTVQPYGVSSVSSFALPPLHRGLPP
ASLQMGPSSSQVGGPTTYFSGILSNLMNHGVITLEPSSQPQDSVGVDFNVDLKVWNESVI
NALYQDLHRQCKTCGLRFKCQEEHRAHMDWHVTKNRNSKNRKQSSRKYFVTVGEWLRAAE
TVGNDGVPSFELTEPIPDRNEEKEMAVPADENQTTCALCQEPFEDFYSDETEEWMYKGAV
YMNAPDGNIVGLQRSHLGPIVHSKCRSGPSNIS
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atggcctccgccgctgcggcggccccagtcgtgggccaggtcgtggagcggttccgcgcg
cggctgcgggaggaggcgggagaggagccgggggcggccgcggtggtgggcgtctacaag
gaggccctcgccgagctcaccttcaactgcaagcccatcatcaccgagctcaccatcatc
gcgggtcagcacgccgcgctcgccgccaggggcatcgccgacgccatctgcgcccgcatc
cttgaggtgccagtcgagcagaaattgccatctttgtatctgctagatagtatcgtgaag
aacataggacgagaatatgtagaggactttgccactcgattgcagaaggtattttgtttt
gcatacagggaggttcatcccaaacagcatcctgcaatgcgacacctcttccgtacctgg
tcgcaagtgttcccttcttctgtccttcaagggatcgaggatgagcttcagttttctcct
tcagagaataagtgtcctgccacaacgactattccgcgacagtcagagtcgttatctcct
aggccatctcatggcatccatgtaaatccagagtatctagaagcgcaacaccaactcaag
aacggtaccaaggtggatcagctagcaactcgaggcaggcaaatgcttgacgtggtggag
gatcatattaatgggttaacaacaaatagtttgcggggatttccttccacttcttcaaag
ctccagagatctatgatactgtatactgaaaatcctgatcaacaagaaacatttcaatca
cgtattggattgataagaagagatatgtccagatcaccacctcctgatgtgctccctagg
aatgcatccccaaaaagaccactagagatgccgcggctgtctcattctgtattggggcat
gatcctagaagattgcctgatagaaatggttggtttgaacggcaacgtgcttttgaggat
agtgcacaacgaccttcgatgagcacgcttgatgaagaatataggaaacaaagtgcaaga
gaacttattgatgcctacggaaattctcaaggcaatgatgctgatgataggcttcccaag
atgcaacggctagaatcaaatggcatggcaagtagatccagtgcacaaaaatggctcact
tcagaggaagaggagtatacttgggaggatatgcgtccaactttgtcccaaaatcgaaac
aacattccgtctttaccttcctctgaaaccttgagagctggatttcctgggccaaacact
gggcagctggattctgatatagggatgcgcagctggcgaagccaggctcctcgaccagca
ctaaatctcgaagacaggactggtcatgttgacatagccactagtaggagatatccaggc
aattttggtctccacaatggagctatttcagagtaccatagttctgagaatacccttgat
cctggaagaattcttgctatgtcagctccaccgtggcagcagactaatggcctgcctttg
cgaatacaagcacctcaaccttcatcaacactgaataggtcggcactgcccactgatgtt
gaaatgcctgtcaagatgttggccactggtggtccatatgatgctatgcatgtagactta
cccttgactaataggtcctcgcctgctcctgctcccatagaatggcctcttcatcatcat
agtcaaccaccacataatacaaaagatactagaggtgcaacagatagtcttgaagttagg
ccatttatcaggcatggagtcaattcatctgtatttgttcctcggcatctatatgatgca
ttggatcggaaaactgtaagtaccggtaacttagctcaaccaccataccagcacccagat
ttgttgtcatcgagtcaacaaaatcaaggtacaaattttggaaatcaatctcagcctcat
gatgtgccacagtttcatcctcattcccattcccatcctccggagacatttagaagcttt
gcccccagcatgcctatagctcccccccaaaatcgattccaaggacaaggaggtagtgca
gcagtaccaccagttacacctctaccgaacaccttttctgtaacacctactgtgcaaccc
tatggtgtgtcttcagtgtctagttttgctctgccaccattacatcgtggcctacctcct
gcttcgttgcagatgggtccatcttcatcacaagttggtgggcctacaacatatttctct
ggaattttaagtaaccttatgaatcatggtgtaattacactggagccttctagtcaacct
caggactctgttggagttgacttcaatgtagacctcaaggtgtggaatgagtctgtcatt
aatgctctgtatcaggatctccacaggcaatgcaaaacgtgtggacttcgttttaaatgc
caggaagagcaccgtgctcatatggattggcatgttacgaaaaacagaaattccaaaaat
cgcaagcaatcttcacgtaaatattttgtcacagtgggggaatggttaagagcagcagaa
acagtaggaaatgatggtgttccttctttcgagctcacggaaccaatccctgacagaaat
gaagagaaagaaatggctgttcctgccgatgaaaaccaaacaacatgtgctttatgtcaa
gagccatttgaggatttctacagcgatgaaactgaagagtggatgtacaaaggtgcagtt
tacatgaatgcacctgatggtaatattgttggtctccaaaggtcgcatttggggcctatt
gtccattccaagtgtcgatctggccccagtaatatttcttag
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