Triticum dicoccoides (wild emmer wheat): 119340345
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Entry
119340345 CDS
T07278
Name
(RefSeq) pre-mRNA-processing-splicing factor 8A
KO
K12856
pre-mRNA-processing factor 8
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119340345
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tdc03041
]
119340345
Spliceosome [BR:
tdc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U5 snRNP specific factors
119340345
Complex C
U5 SnRNP specific factors
119340345
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
PROCN
PRP8_domainIV
U6-snRNA_bdg
PRO8NT
U5_2-snRNA_bdg
PROCT
RRM_4
JAB
Motif
Other DBs
NCBI-GeneID:
119340345
NCBI-ProteinID:
XP_037468143
LinkDB
All DBs
Position
7B:complement(37118666..37128231)
Genome browser
AA seq
2350 aa
AA seq
DB search
MAAAPPPPGTAGAGLPPPPPPPAAAPPQAGQPLTPAELEAQLVEKARKWHQLNSKRYGDK
RKFGFVEAQKEDMPPEHVRKIIRDHGDMSSKKYRHDKRVYLGALKFVPHAVYKLLENMPM
PWEQVRDVKILYHITGAITFVNEIPWVVEPIYLAQWGSMWIMMRREKRDRRHFKRMRFPP
FDDEEPPLDYADNLLDVEPLEAIQLELDPEEDGAVYNWFYDHNPLVKTNFINGPSYRKWN
LSLPIMATLYRLAGQLLSDLTDRNYFYLFDMESFFTAKALNMCIPGGPKFEPLYRDMEKG
DEDWNEFNDINKLIIRQPLRTEYRIAFPHLYNNRPRKVRLCIYHTPMIMYIKTEDPDLPA
FYYDPLINPITSTSKVDRREKKASEGDDEDDFSLPEGVEPLLNRFPLYTDTTAAGISLLF
APRPFNMRSGRTRRAEDIPLVSEWFKEHCPPAYPVKVRVSYQKLLKCYVLNELHHRPPKA
QKKKHLFRSLQATKFFQSTELDWAEAGLQVCKQGYNMLNLLIHRKNLNYLHLDYNFNLKP
VKTLTTKERKKSRFGNAFHLCREILRLTKLVVDANIQFRLGNVDAFQLADGLQYIFSHVG
QLTGMYRYKYRLMRQIRMCKDLKHLIYYRFNTGPVGKGPGCGFWAPMWRVWLFFLRGIVP
LLERWLGNLLARQFEGRHSKGVAKTVTKQRVESHFDLELRAAVMHDVLDAMPEGIKQNKA
RTILQHLSEAWRCWKANIPWKVPGLPVPIENMILRYVKSKADWWTNVAHYNRERIRRGAT
VDKTVCRKNLGRLTRLWLKAEQERQHNYLKDGPYVTPEEAVAIYTTTVHWLESRKFSPIP
FPPLSYKHDTKLLILALERLKESYSVAVRLNQLQREELGLIEQAYDNPHEALSRIKRHLL
TQRAFKEVGIEFMDLYSYLIPVYEIEPLEKITDAYLDQYLWYEGDKRHLFPNWVKPADSE
PPPLLVYKWCQGINNLQDIWDTSDGQCVVMLQTKFEKFFEKIDLTLLNRLLRLVLDHNIA
DYVTAKNNVVLSYKDMSHTNSYGLIRGLQFASFIVQYYGLVLDLLLLGLTRASEIAGPPQ
MPNEFLTYTDTKVETRHPIRLYSRYIDKVHIMFRFTHEEARDLIQRYLTEHPDPNNENMV
GYNNKKCWPRDARMRLMKHDVNLGRSVFWDMKNRLPRSITTLEWENGFVSVYSKDNPNLL
FSMSGFEVRILPKIRMTQEAFSNTKDGVWNLQNEQTKERTAIAFLRVDDEHMKVFENRVR
QILMSSGSTTFTKIVNKWNTALIGLMTYFREATVHTQELLDLLVKCENKIQTRIKIGLNS
KMPSRFPPVIFYTPKEIGGLGMLSMGHILIPQSDLRYSKQTDVGVTHFRSGMSHEEDQLI
PNLYRYIQPWESEFIDSQRVWAEYALKRQEAQSQNRRLTLEDLEDSWDRGIPRINTLFQK
DRHTLAYDKGWRVRTDFKQYQVLKQNPFWWTHQRHDGKLWNLNNYRTDVIQALGGVEGIL
EHTLFKGTYFPTWEGLFWEKASGFEESMKYKKLTNAQRSGLNQIPNRRFTLWWSPTINRA
NVYVGFQVQLDLTGIFMHGKIPTLKISLIQIFRAHLWQKVHESVVMDLCQVLDQELDALE
IETVQKETIHPRKSYKMNSSCADVLLFAAHRWQMSKPSLVSESKDVFDQKASNKYWIDVQ
LRWGDYDSHDIERYTRAKFMDYTTDNMSIYPSPTGVMIGLDLAYNLHSAFGNWFPGSKPL
LQQAMNKIMKSNPALYVLRERIRKGLQLYSSEPTEPYLSSQNYGEIFSNQIIWFVDDTNV
YRVTIHKTFEGNLTTKPINGAIFIFNPRTGQLFLKVIHTSVWAGQKRLGQLAKWKTAEEV
AALVRSLPVEEQPKQIIVTRKGMLDPLEVHLLDFPNIVIKGSELQLPFQACLKIEKFGDL
ILKATEPQMVLYNIYDDWLKSISSYTAFSRLVLILRALHVNNEKAKMLLKPDKTIVTEPH
HIWPSLTDEQWLKVECALRDLILSDYAKKNNVNTSALTQSEIRDIILGAEIAPPSQQRQQ
IAEIEKQSRETNQVTAQTTRTVNVHGDELIVTTTSPYEQAAFASKTDWRVRAISATNLYL
RVNHIYVNSDDIKETGYTYIMPKNILKKFICIADLRTQVAGFLYGLSPQDNPQVKEIRCI
SIPPQHGTHQMVTLPSNLPEHEFLADLEPLGWMHTQPNEAPQLSPQDLTSHAKILENNKQ
WDGEKCIILTCSFTPGSCSLTAYKLTPSGYEWARGNKDNGSNPQGYLPTHYEKVQMLLSD
RFLGFYMVPDNAPWNYNFMGVKHDPLMKYSMKLGTPRDFYHEDHRPTHFLEFSNIEEGEV
AEGDREDTFS
NT seq
7053 nt
NT seq
+upstream
nt +downstream
nt
atggcggccgcgccccctcccccgggcacggccggcgcgggcctgcccccgccccctccc
ccgccggccgccgcgcccccgcaggccggccagccgctcaccccggcggagctcgaggcg
cagctcgtcgaaaaagcccgcaagtggcaccagctcaactccaagcgctacggcgacaag
cgcaagttcggcttcgtcgaggcgcagaaggaggacatgccccccgagcacgtccgcaaa
atcatcagggaccatggggacatgtcttcgaagaagtacaggcatgacaaacgtgtttat
cttggagcactcaaatttgtgcctcatgctgtttacaaactactggagaatatgccgatg
ccctgggaacaagttcgcgatgttaagatcttgtaccatatcactggcgccataaccttc
gtaaacgagatcccatgggtagttgagcccatttacttggcgcagtggggctctatgtgg
atcatgatgcgaagggagaagagagataggcggcatttcaagagaatgcgctttcctcca
tttgatgacgaggaacctccactggattacgctgataatttgttggacgttgaaccactg
gaggctatacaactggagttggatccagaggaagatggagctgtgtataactggttttat
gatcacaatcccctcgtgaagaccaattttataaatggtcccagctataggaagtggaat
ctgtctcttcccataatggcaacactttatcgccttgctggtcaacttttgtcagacttg
actgatcggaattatttctatttgtttgacatggagtctttctttactgccaaagcactt
aacatgtgcatcccaggaggtccaaagtttgagccattgtaccgtgatatggagaagggg
gatgaggactggaatgaatttaatgacatcaataaactcatcatccgtcaaccacttcgg
accgagtacagaattgcgttcccgcacctgtacaataacaggccaaggaaagtgagactt
tgcatatatcatactcctatgataatgtatatcaagacggaggatccagatctgcctgca
ttttattatgatcctctgataaatccgatcacttcaaccagcaaggttgatcgtcgggag
aagaaagcaagtgaaggtgacgacgaagatgactttagtctccctgagggtgtggagcct
cttttgaaccgatttccactttacactgacacaacagctgccggcatttcattgcttttt
gctccaaggccttttaacatgagatctggtagaacacgccgtgctgaggatatccctctt
gtatctgagtggttcaaagagcactgtccaccagcgtatccagttaaggtccgggtgagc
taccagaagctgctgaagtgctatgtgctcaatgagctacatcacaggcctccaaaagca
cagaagaagaaacatctgttccgttcactgcaagcaacgaagttcttccaaagtacagag
cttgattgggcagaagctgggttgcaagtttgcaagcagggctacaacatgcttaacttg
ttgattcacaggaagaatctgaactatcttcacttggactacaatttcaatttgaagcct
gtgaagacactcacaacaaaagagagaaagaaatctcgttttggaaatgctttccacttg
tgtcgtgagattctgcgacttacgaagctggttgttgatgcaaacatccaatttcgcttg
ggaaatgttgatgcctttcagttggctgatggtctgcaatacatattctctcatgttggt
cagttgaccggtatgtacagatacaagtatcgcctgatgcggcaaattaggatgtgcaaa
gatctgaagcacttgatatactaccgtttcaacactggtcctgttggaaaaggacctggc
tgtggtttttgggctccaatgtggagagtgtggctattcttccttcgtggtattgtgccc
ttgcttgaaaggtggctaggtaatttgttggccaggcagtttgaaggtcgccattcaaaa
ggagttgctaaaacagtaaccaagcaacgtgtcgagtctcactttgatttggaacttcga
gctgcagttatgcatgatgtccttgatgctatgccagagggcatcaagcaaaacaaggcc
cggactatactgcagcatcttagtgaggcatggcgctgctggaaggcaaatatcccctgg
aaggtccctggcctgccagttcctattgagaacatgatactccgttatgtgaagtccaag
gctgattggtggacaaatgtcgctcactacaaccgtgagcgtatccggcgtggtgctacc
gttgacaagactgtctgccgcaaaaatcttggaaggttgactcgtttgtggctgaaggca
gaacaagagaggcaacacaactacttgaaagatgggccatatgtgacgcctgaagaagca
gttgctatttatacaaccacggtccattggctggagtcaaggaagttctcaccaattcct
tttcccccactctcatacaagcatgataccaaacttcttatattggcactggaaaggcta
aaagagtcatacagtgtggcagtaagattaaatcaactgcagcgagaggaactgggttta
atagagcaagcatatgataatccacatgaagctttgtcaaggataaaacgacatcttctt
actcagcgtgcttttaaagaagttggtattgagtttatggatctgtacagctacctgatc
ccggtatatgaaattgagcctcttgagaaaattactgatgcataccttgaccaatacttg
tggtatgaaggggacaaacgccacctcttcccaaattgggtaaagcctgctgattcagaa
ccacctcctctacttgtttataagtggtgccaaggtataaataatttgcaggacatatgg
gacactagtgatgggcagtgtgttgtgatgctgcagacaaaatttgagaagttctttgaa
aaaattgatctgactctgttgaacaggcttctacggttggtcttggaccacaacattgct
gattatgtcactgcaaagaataatgttgtgctgtcttacaaggatatgagtcacacaaat
tcttatggacttattcgaggtcttcagtttgcatcttttattgtgcagtactatgggctg
gtgctggatctcctacttcttggtttaacacgagccagtgagattgcagggccgcctcag
atgccaaatgagttccttacatatactgacactaaagttgagacaaggcatcccatcagg
ctgtattctcgatatatcgataaggtgcatataatgttcaggttcactcatgaagaggca
agggatttgattcagcgttacttgacagagcatcctgatcctaataatgagaacatggtc
ggttacaacaacaagaaatgttggcctagagatgcaagaatgaggctcatgaagcatgat
gttaatctgggaagaagtgtattttgggatatgaagaatcgcctgccaaggagcattact
acattagaatgggagaatggctttgtctctgtatacagcaaggataacccaaacctgctc
tttagcatgtctgggtttgaggtccgtatactgccgaagatacgtatgactcaggaggca
ttcagcaacacaaaagatggagtatggaacttgcagaatgagcagacaaaagaaaggaca
gctattgcatttttgagggttgatgatgaacacatgaaggtgtttgagaaccgtgtcagg
caaatccttatgtcatcaggatcaacgacatttaccaagatagtcaacaagtggaacact
gctctcattggcctcatgacatatttccgtgaagcaactgttcatacacaggaactactg
gatctgcttgtaaaatgtgaaaacaagattcagactcgcataaagattggcctgaactca
aagatgcccagcaggtttccaccagttatcttctatacgcccaaggaaattggaggtttg
ggtatgttgtcaatgggtcacattttgataccacagagtgatcttaggtatagcaaacag
acagatgttggtgtgacacattttcgaagtggtatgagtcatgaagaggaccagcttatc
cccaacttgtatcgctacatccaaccatgggagagcgagtttattgattctcagcgtgtt
tgggctgagtatgctttgaagaggcaggaagcacaatcgcagaataggcgcttaacactt
gaagatctggaagattcatgggatagaggcataccccgtatcaacactttattccaaaaa
gaccggcacactttggcctacgacaaggggtggagggtgcggacagactttaagcagtat
caagtgctgaaacagaacccattctggtggacacatcagcgacatgatggaaagctgtgg
aatctgaataactacagaactgatgtcatccaagcacttggtggtgtggaaggtatcctg
gaacataccttatttaaaggaacatatttccctacttgggagggtttgttttgggagaag
gcttcaggtttcgaggaatcaatgaagtacaaaaagctgacaaatgcacagcgttctggg
cttaatcaaatccccaacagaagatttaccctctggtggtcgccaaccattaatcgtgca
aacgtatatgttggtttccaggttcagctagatctgacagggatattcatgcatggtaaa
attccaaccctgaagatctctctgattcagattttccgtgcacatctttggcagaaggtc
catgaaagtgttgttatggatctttgccaagttctggatcaggagttggatgcgctggag
attgagacagtacagaaggagacaatacatcccaggaagagttacaagatgaacagttca
tgtgcagatgtcctcctttttgctgcacataggtggcagatgtccaaaccaagcttagtt
tccgagtcaaaggatgtcttcgatcagaaagcgagtaacaagtactggattgatgtgcaa
ctacgatggggagactatgattcacatgacatagaacgttatacaagagcaaaatttatg
gactacacgacagataatatgtccatctacccttctccgactggagtgatgattggactt
gatctagcttataatttgcactctgcttttggcaattggttccctgggtcaaagcccctc
ctccagcaagcaatgaacaagatcatgaagtcaaatcctgctctgtatgtgctgagggag
agaataagaaagggacttcagttgtattcatctgaacccactgagccgtatctgtcttca
cagaactatggagagatattcagcaatcaaatcatatggtttgtggatgacacgaatgtc
taccgagttaccattcacaaaactttcgagggtaacctgaccaccaaacccatcaacggt
gctatctttattttcaatccaagaaccgggcaactatttctgaaggtcatccacacaagt
gtatgggcaggacaaaagcgtctagggcagctggccaagtggaaaactgccgaggaggtt
gctgcattagttcggtctcttcctgtagaagagcagccaaagcaaattattgtgacaagg
aagggtatgttggatccactggaagtccatctgcttgatttccctaacattgttatcaag
ggtagtgagttgcagctgccattccaagcttgcttgaagattgagaagtttggtgatctt
attctcaaggctacagaaccgcagatggttctttataacatatacgatgactggctgaaa
agtatctcgtcctacaccgcattctctcgtcttgtgcttatattaagagcattgcatgtc
aataatgagaaggctaagatgttgctgaagcctgacaagacgattgttacggaaccacat
catatctggccatctttgactgacgagcagtggctgaaggtcgaatgtgcgctcagggat
ctcattctttccgattatgcaaagaaaaacaacgttaatacttctgcacttacgcaatct
gagattcgtgatataatacttggtgctgaaatagctccaccgtcacagcagaggcaacag
atagctgagattgagaaacagtcccgagagacaaatcaggtaactgcacagacaacgagg
acagttaatgtgcatggagatgagctcatcgtcacgacgaccagtccgtatgagcaagca
gcatttgcatcgaagacagattggcgtgtcagggccatctctgctacaaacctgtatctc
cgtgtcaaccacatttatgttaactcggatgatataaaggagactggctatacttacatc
atgccaaagaatatattgaagaagttcatatgcatagcagatctacggacacaggttgca
ggtttcctgtatgggctgagtccacaggataatccccaagtcaaggagatcagatgcata
tccattccgccacagcatggaactcaccagatggtgactttgccatcgaatctcccagag
catgagttccttgctgacttggagccattgggatggatgcatacccagccgaatgaagct
cctcagctatcacctcaggatttgacatcacatgctaaaattttggagaacaacaagcag
tgggatggtgagaagtgcatcattttgacctgcagcttcaccccaggatcgtgctcgttg
actgcatacaaattgacaccaagtggttatgagtgggcccgtggcaacaaggacaacggg
agcaacccacaagggtacctcccaactcactacgagaaggtccagatgcttctcagcgac
cgcttccttggattctacatggttccggacaacgctccgtggaactacaacttcatggga
gtcaagcacgacccgctgatgaagtacagcatgaagctgggcacaccccgcgacttctac
catgaggaccacaggccgacgcacttcctggagttcagcaacattgaggagggtgaggtc
gccgagggggacagggaggacaccttctcgtag
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integrated database retrieval system
