Triticum dicoccoides (wild emmer wheat): 119348954
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Entry
119348954 CDS
T07278
Name
(RefSeq) protein PAT1 homolog 1-like
KO
K12617
DNA topoisomerase 2-associated protein PAT1
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119348954
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119348954
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
mRNA cycle factors
P-body specific factors
119348954
mRNA degradation factors
5'-3' decay
Decapping complex
119348954
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
PAT1
Motif
Other DBs
NCBI-GeneID:
119348954
NCBI-ProteinID:
XP_037472859
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All DBs
Position
1B:complement(591630203..591636902)
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AA seq
817 aa
AA seq
DB search
MRGLRADAGGGGGGASSSSTSTAENSRFDSGQYSFFGKAPLEGLELGGSLADDGGLDGGY
GGGGFGGHDDGAYQLSPVGEEIDCMSNLSEIDDLASTFAKLNRSISGARNPGVIGDRRSI
SRESSLTTDWAQEAEFSNWVDHDILDSDEFQDSKQLCPQPQYLPQFGESKPLSRTSSYPL
EPLQHRSSEPILGHRSPSFTSYPPPGGGGLSYPAQGLTRHSSIPSPGAGYQMGSPSSSLT
GSPYNMTGLPHGLRLGRSMSYTSADLYANNLLQNEWPNQAGSHAFEHLNLQPSLLQQQLS
FPGSSMSSLLFSQQQQQQQRLSLVQPLHHHNYLNMQPHLYHHHSPEIIGRFDHIPSVPSP
RDKRSRSGRGKHSIRFSQQQSDTASQNVDTGGTKFRSKYMSSEEIDTILRMQHSGSHSSD
PYVDDYYHQACIAKRSVNSQKKVNFSPMSIKDSHSKSRSGGDQHSYLKVDSLGRVSFSSI
RRPRPLLEVDIPASGDGHKSSTRPLEKEPMLAARITVEDGICLLLDVNDIDRVLQSSQAQ
DSSFQLRRRRQVLLEGLATSLELVDPFGPNKPGNSSGLAPTDDLIFLRIVSLPKGRKLLA
RYLRLLAPGSELTRIVCMAIFRHLRSLFGGLPSDSGAAETTVSLAKTVSSCVHHMELSAL
SACLAAVVCSSQQPPLRPLGSSAGDGAALIIKSVLDRATELLADPHSAANYSRSTRSLWQ
ASFDAFFGLLTKYCDSKYGSILQRFSMQGSNSMAGPEASKAVSREMPVELLRASLPHTSE
EQRQMLLDFARKSMPVIGYNHSGASGGHSTTSEPVPG
NT seq
2454 nt
NT seq
+upstream
nt +downstream
nt
atgaggggcctccgggcggacgccggcggcggcggcggtggcgcctcctcctcgtcgact
tccaccgcagagaactcgcgcttcgactcggggcagtattccttcttcggcaaggcgccg
ctggaggggctggagctcggcggcagcctggcggatgacgggggcctggacggcggctat
ggcggcggcggcttcggtgggcacgacgatggggcttaccagctgtctcctgtgggggaa
gagattgattgcatgagtaacttgtctgaaattgatgatcttgcaagcacgttcgcaaag
ttgaaccgaagtattagtggagcaaggaatcctggtgttattggtgatagacgatcaatt
tccagggaaagttctttgactaccgactgggcccaggaagcagagttctcgaattgggtg
gatcatgatatactggacagcgacgaatttcaagacagcaaacaattgtgtcctcagcca
cagtatttgcctcagttcggagagtcaaaaccattgagccgaacatcatcctatcccctg
gagccactacaacaccgctccagtgaacctattctgggacatagatctccttcatttaca
tcctatcctccaccaggtggtggtggattatcttatcctgcacaaggtcttacgcggcac
tcgagcattccatcacctggtgctggttaccaaatgggttctccaagttcgtcacttact
ggttctccatataacatgactggtctacctcatggactgcggttggggcgaagcatgtct
tacacttctgcagatctatacgcgaacaacttgctgcaaaacgaatggccaaatcaagct
ggttcgcatgcttttgagcatcttaatctacagcccagtttattgcagcaacaactatct
tttccgggcagttcaatgtcttcgttgctattttctcagcagcaacagcagcagcagagg
ttgtcactagttcaaccgcttcatcatcacaattacctaaacatgcagcctcacttgtat
caccatcattccccagagataataggcaggtttgatcatattcctagtgtgccttcacca
agggacaagagatcaaggtcaggaagaggaaaacacagtatacgcttttctcaacaacaa
tctgatacagctagccagaatgttgacactggaggaacaaaattcagatcaaagtatatg
tcatctgaagagattgatactattttaagaatgcagcactctggcagtcacagcagtgat
ccttacgtcgatgactactaccaccaagcttgtatagccaaaagatccgtcaattctcag
aagaaggtgaatttctcccccatgtcaataaaagactcccactcaaagtctaggtctggt
ggtgatcagcattcatacctgaaggttgattctcttggaagagtgtcattctcttccata
cgtaggcctcgccctcttcttgaagttgatattcctgcatctggtgatggtcacaagtca
tctacgaggccactggagaaagagccaatgctggcagccagaattaccgttgaggatggt
atatgtcttcttctagatgtaaatgacattgaccgtgtgttacagtctagccaggcacag
gacagcagcttccaactgaggcgaaggcgacaggtcctccttgaaggcttagctacatca
cttgagcttgtcgacccttttggccccaacaaacctggcaattcatctggattggccccg
acggatgaccttatttttctccgcattgtttctctccctaaaggacgcaagctcttggca
cggtatctccgacttcttgcccctggaagtgagctaacccgcatagtttgcatggctatc
tttcggcatcttaggagcttgtttgggggtttgccatcagattctggtgctgcagaaaca
acagttagtcttgccaagaccgtgtcctcctgcgtgcatcacatggagctcagtgccctc
agcgcctgcctcgcagctgttgtctgctcgtcgcagcagccacctctccgccctcttggc
agctctgctggtgatggtgctgctctaatcatcaaatcagtactggacagagcaactgag
ctactggccgatccccattctgcagccaactacagcaggtcaacccgttcgctttggcag
gcgtcattcgatgccttctttgggcttctgacaaaatactgcgacagcaagtatgggagc
attctgcagaggttcagcatgcagggatccaactcaatggctggacctgaagcctcgaag
gccgtcagcagggagatgcccgtcgagctactgcgtgcaagccttccgcacaccagcgaa
gaacaacgccagatgcttcttgactttgctcggaaatccatgcctgtgatcggctacaac
cactcgggcgctagcggcgggcattctactacttccgaacctgttcccggttaa
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