Triticum dicoccoides (wild emmer wheat): 119349396
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Entry
119349396 CDS
T07278
Name
(RefSeq) probable pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH2 isoform X1
KO
K12820
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX15/PRP43 [EC:
5.6.2.6
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119349396
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tdc03041
]
119349396
03009 Ribosome biogenesis [BR:
tdc03009
]
119349396
Enzymes [BR:
tdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119349396
Spliceosome [BR:
tdc03041
]
Complex A
U2 snRNP components
U2 related factors
119349396
Complex B
119349396
Complex C
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-SnRNP related factors
119349396
Ribosome biogenesis [BR:
tdc03009
]
Eukaryotic type
90S particles
Helicases
119349396
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HA2_C
OB_NTP_bind
HA2_N
AAA_19
AAA_22
Helicase_C
GIT_SHD
Motif
Other DBs
NCBI-GeneID:
119349396
NCBI-ProteinID:
XP_037473322
LinkDB
All DBs
Position
1B:651847483..651856259
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AA seq
768 aa
AA seq
DB search
MVKGRKRKADSINNPWNNRPYSKRYYELFDRRHTLPVWQQKDEFIRTLLDNQIIILAGDA
GSGSTTQIPHFLFEALGFGNNTVIAYALPSRIGAMSIAQRVAEEMDVSIGHEVGYKTRFE
ASTSNITALKFLTDDVLFREALMDPLLTKYSVIVLGEVHKFRLSTDVLCTVLKKALEERP
KMKLVLMSAIDEEATFQCYFPSAIIMKLPGPIYPVTIHYAPKEVESYVKAAIDISLQIHS
NEPAGAILIFLRAQAEVEYACWKIRQKLNASRDLVGAVDIVPIYSTISLEMQQRLFQPPP
IIWNVEAPPGRTIFVSTGIAEASLTLDGIVYVIDSGFSYQKICDGDMWAEKHILAPIPKA
CASQRAGLAGRKQPGRCYRLYTEEWFQELSQQVYPESSRRNLGNTVLMLKKLHISSLKKG
FIDAIAPTTESLEVALKGLRFLGALDKNDNLSSDGEIMCEFPLDVQMTRTLLASVTFNCS
NEIISISAMLSVPSCFLRPMEAVKAADNARKKLCHMDGDHLTLLNVYNEYIRNNQDPQWC
EENFVKFEVMKSAHSIREQLAGTMRRLNLKLSSPVVDSRFYNNNIKLAMLSGYFMQVAHR
EQSGHYRTVKANEELRIDVFTALNRNPEWLMYHEIRGSRMCIVTDVTAGMVFQAARQYYD
LRKFPHCQSKVSMERVLLNWLTDSDPSFAGLYKTEPEELPRLLMDAQWERLVPIQVAPLE
EGPGCPSDSFRCETVPQMLCCSTGKVPQSGGQQTLSPTSGLGPDDPQS
NT seq
2307 nt
NT seq
+upstream
nt +downstream
nt
atggtgaaggggcggaaacgcaaggcggactcaatcaacaatccatggaacaatcggcca
tactccaagagatattatgagctatttgacaggcgccatacccttcccgtgtggcagcaa
aaagatgaattcatacgcaccctactggacaaccagatcattatccttgctggagatgcc
gggagcggcagtactacccagatcccacactttctgtttgaggctttaggatttggcaac
aacactgtaattgcctacgccctgccatccagaattggggccatgtcaatcgctcaaaga
gtcgcggaggaaatggacgtaagcattgggcatgaagttggctataagactcgatttgaa
gcttctaccagtaacataacagctctaaagtttctcaccgatgatgtactttttagagag
gcgttgatggacccgcttttgacgaaatacagtgtgattgttcttggtgaggttcacaag
ttcagactttcaacggatgttctttgcactgttctgaagaaagctctggaggagcgacct
aagatgaagcttgttcttatgagtgctatcgatgaagaagcaacttttcaatgctacttc
cccagtgccatcatcatgaagttgcctggtcccatctatccagttactatccattacgct
ccaaaagaggttgagagttatgtaaaagctgctattgacatatctctccagatacatagc
aatgaacctgcaggagctattctgatatttctccgtgcacaagctgaagttgaatatgca
tgctggaaaattagacagaagctcaatgcctcgcgcgatcttgttggtgcagttgatatt
gtcccaatttactctacaatatccttagaaatgcagcagaggctttttcaacctcctcct
atcatatggaatgtggaagcgcctcctggtaggacgatctttgtgtctacaggaatcgct
gaggcttcattaacactagatggtatagtttatgtcatagattctgggttttcttatcag
aagatttgtgatggagatatgtgggcagaaaaacacattctagcaccaattccaaaggca
tgtgccagtcagagagcaggtcttgctggaagaaaacaacctgggaggtgctacaggttg
tacactgaggagtggtttcaggaactgtcgcagcaggtgtaccctgaaagttccagacga
aacttgggaaatacagttctcatgttgaagaagctgcacatttccagcttaaagaagggg
tttatagatgctattgctcccacaacagaatctcttgaagtggccttgaaaggtttaaga
ttcttgggagcactcgataagaatgataacctctcatctgatggcgagattatgtgtgag
tttcccctagacgtgcagatgacaaggacgcttctggctagtgtaacattcaattgctct
aatgagatcatctcaatatcagccatgctttcagtaccaagttgctttctccggcctatg
gaggcagtgaaagccgctgataacgcgaggaaaaaattatgtcatatggatggcgatcac
cttacacttctaaatgtgtacaatgaatacatacgcaataatcaagatcctcagtggtgt
gaagaaaactttgtaaaatttgaagtcatgaagtcagcgcatagtattagagagcagctt
gctggtacgatgagaaggttaaacttaaaactgtctagcccggttgtggacagccggttc
tacaacaataacattaagctggcaatgctgtctggatattttatgcaagttgctcataga
gagcagtctggacactacaggacggttaaggctaatgaggaactacgcattgatgtgttc
actgcactaaaccgtaatcctgaatggctaatgtaccatgaaatacgtggcagcaggatg
tgcattgtcactgatgtgacggcaggaatggtgtttcaagctgctcgtcagtactatgat
ctgaggaagtttccgcattgccagtcaaaagtgtctatggagagggtcctcctcaattgg
ctaactgattcagatccttcttttgccggtctttataagactgaaccagaagaattgcca
cgcctacttatggatgcccaatgggagagattggtgccgattcaagtagccccactcgag
gaaggtcctggctgccccagtgattcttttcgctgtgaaaccgtcccccagatgctttgt
tgcagcaccggaaaagttcctcaatctggcggtcaacaaactctttcaccaacgtcaggg
cttgggcctgatgatcctcagagttga
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