Triticum dicoccoides (wild emmer wheat): 119353115
Help
Entry
119353115 CDS
T07278
Name
(RefSeq) symplekin-like
KO
K06100
symplekin
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119353115
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdc03021
]
119353115
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119353115
Transcription machinery [BR:
tdc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119353115
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
119353115
U7-dependent histone pre-mRNA processing factors
119353115
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
Motif
Other DBs
NCBI-GeneID:
119353115
NCBI-ProteinID:
XP_037475602
LinkDB
All DBs
Position
2A:complement(45975710..45985826)
Genome browser
AA seq
1259 aa
AA seq
DB search
MAVALPPAFPPHGLPQLDASAGDMGPRLLQVRGLRRLPLHELVPRLAELRADEAGPVRKV
VVEMIGEIGSKHTVFIPDMMPSLLDLLNDEMPAVARQAVKTGTDLFAKVLQELVIQGLFS
SGGIDESLKSSWEWMLKLKSAVSLMAFQPTSNEGVRMLAVKFVEKTVLMHTPDPNITSDP
PNQATEDMGFNIAWLRGGHPLLNVGDLAMEASQSLGLLLEQLKSPKIRLLSTSMIIVFVT
SLSAIAQRRPSFYGRILPVLLSLDPTNTIIKVQIPGAFHALKSAIDACLKCTHSSAEPWR
ARLLEAQNIINQGDSIAANDSNAGRSAGDTSNRAESLPLTETSTDNSNKRSLADDMNNIL
EDDGHSSKRVKQSHDSQEHSEEANKRNTEAASVDSSSNQPTPARTENSEAVYQLIGMFAA
LAAQGDRAAGSLQILSSSIAADLLAEVVMVNMQHLPVSGPEVDQRQHPSTSQSSVAPSRN
LLSGRFPMLEALWKTISETDQAEAPPAKDSALVTSAAGEIIPVLVSSPVPSALKTPKEED
ISSAVPLDIEMVEAKVPTADATGLSMEIQESSETSHASTEPQGTQEHSGSFVTPLPADNS
SVGISLAQCSETRSPSSSTIDGSQSQFSSLTAPTSQYVLPKLVVTNVDLTDEAKDLLQKE
AFLRILERDKQVESGGSKARLPLLSHLSVEFPLELDPWELLKKHVLSDYVTKEGHELTLG
ILNRLYREAEQDQDFLSSRTATSIYESFVLTIAENLRDMFPASDRSLGKLLCEMPYLPEG
VLKLLEGLCSPGNNEKQDKDLQSGDRVTQGLSAVWNLIMLRPPNRDRCLDIALQSSINRL
DEVRMKAIRLVANKLFPMASISKRIEDFANEKLNSVLEVIPAAESASAAEMATPEVHQDG
GLENLSSVADALTLMSLYFALCTKKHSLLRRVFEIYGSLPQAAKQAVHRQVPILIRTIRS
SPDLLGIISDPPADCRGLLMQVLQTLTDGAVPSQDLISSIKNLYSKTKDTEFLFPVMAHL
PKDEILSVFPNIVNLPVDKFQVALSRILQGSPQHGPILDPSEILIAIHVIDPEKEGIPLK
KVMDACAACFEQRTTFTQQVLAKALNQLVEQIPLPLLFMRTVMQAISAFPALVDFVMEIM
SRLVNKQIWKYPKLWVGFLKCAILTKPQSYGVLLQLPAPQLENALNKNPLLKAPLVEHAS
QPNVRSTLPRSILVVLGLAEDQQQQPAPEAQSSQNQAAETSSSAAEAATEVTQESSAAS
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atggcggtggccctcccgccggccttccctccgcacggccttccccagctggacgcttct
gccggggacatgggcccgcgcctcctgcaggtgcgcgggctccgccggctgccgctccac
gagctcgtcccccgcctcgccgagctccgcgccgacgaggccggccccgtgcgcaaggtc
gtcgtcgagatgattggtgagattgggtcaaagcacactgtgtttatacctgacatgatg
ccctctctgctggatcttttgaacgatgagatgccggcggttgcgagacaggctgttaaa
acaggaacagacttatttgccaaagtactgcaagagctcgttatccagggtttgttctcg
agtggggggattgacgagtcactcaagtcatcatgggaatggatgctcaagcttaaatca
gcggtgtcgctcatggcatttcagcctaccagcaatgaaggagtcaggatgctggctgtt
aagtttgttgaaaaaacagttcttatgcacaccccggatcctaatatcacatctgatcca
ccaaaccaagctacagaagatatgggattcaatatagcatggttaaggggaggtcaccct
ttgcttaatgttggtgatctagccatggaagccagccagagcctgggactgttgctagaa
caacttaagtctcctaaaataagattactcagcacttcaatgatcattgtctttgttact
agtctctcggctattgctcaaagaaggccttccttttatggacgcatactgccagtttta
ctttctttggacccaacaaataccattatcaaagtgcaaattccaggcgcattccatgct
ttgaagagtgccattgatgcatgcctgaaatgtacacattcaagtgctgagccgtggcga
gctcgtctattggaagctcaaaatattataaaccagggagattcaatagctgcaaatgat
tcaaatgctggtaggagtgctggagacacgtcaaacagggccgaatcgttgcctctgaca
gaaacaagcaccgacaacagtaacaagcggagtctggctgatgacatgaataatattcta
gaagatgatggtcattccagtaaaagggtcaaacaatcacatgattctcaggaacatagt
gaagaggcaaacaagagaaataccgaggcagcctctgttgattcatcatccaatcaaccc
acccctgcaagaactgagaattctgaagctgtatatcaattaattggtatgtttgctgca
ttagctgcgcaaggcgacagagctgctggatcactacaaatcctgtcatccagtatcgct
gctgacctattagcagaggttgtaatggttaacatgcaacacctgccagtttctggtcct
gaagtagatcaacgacaacatccttcaactagccagtcctctgttgctcctagtcggaat
cttctttcaggtcgctttccgatgttagaggctctgtggaagacaataagtgaaactgat
caagctgaagcacctccagctaaggattctgctctggtgacatctgctgctggtgagatc
ataccagttcttgtcagttctcctgttccttctgcattaaaaacaccgaaggaggaggac
attagttcagcagttccactagatatagaaatggtagaggctaaagtgcctactgcagat
gccactgggttatcgatggagattcaggaatcatcagaaacttcccatgcttctacagaa
cctcagggaacccaagaacattctggcagttttgttactccattgccagctgacaattct
tctgttggtatcagtttggctcaatgttcagaaactcgcagtccaagctcctctactatt
gacggaagccagtcacagttttcatctttgactgcccctacttcacagtatgttcttcca
aaattggttgtgactaatgtcgacctgaccgatgaggctaaagatctccttcagaaagaa
gcgtttctgcgtattcttgagagagataagcaagtagagtctggtggttcgaaagctcgt
cttccgttgctttctcacctaagtgttgagtttcctttggagctggacccttgggagctt
ctcaaaaagcatgtactatctgactatgtaactaaggagggacacgagttgacactgggc
atcctgaacagattatatcgcgaggcagaacaggatcaggacttcctttcatctagaact
gcaacatcaatttatgaatcatttgttctgacaatagctgaaaatcttcgtgatatgttt
ccggcttcagatagatcacttggcaaattgctttgtgagatgccatacctaccagaaggt
gtattaaaattgctagagggtttatgttctcctggaaataatgaaaagcaggacaaggat
cttcagagtggtgacagggtaactcaaggtctaagtgctgtctggaaccttatcatgtta
agacctccaaatcgggacagatgtctggacattgctttgcagagttcaatcaatcgtcta
gatgaggtccgcatgaaggcaatacgtttggtagcaaataaactatttcccatggcaagc
atttccaaaaggattgaagattttgcaaatgaaaaacttaattcagtcctagaagtgatt
ccagcggctgaatctgcgtcagctgctgagatggccacacccgaggttcaccaggatggt
ggtttagaaaatttatcctcggtagcagatgctctaactttgatgtcgctgtattttgct
ctgtgtaccaagaagcactcccttctccgacgtgtatttgaaatatatggcagtcttcca
caggctgccaaacaggcagttcacagacaagtacccattctgattcgcacgatacgttcc
tctcctgaccttcttggtatcatctcagatccaccagctgactgtcggggcctactcatg
caggttttacagactctcactgatggtgcagtgccatctcaagatctgatttcttccata
aagaacttatattcaaaaactaaggatactgagttccttttcccagtcatggctcatctg
ccaaaagatgagattctgtctgtgtttcccaatattgttaatcttccggtggataagttt
caagttgccctttctcgaatcctgcagggatcaccacaacatggccctattcttgaccca
tcagaaattttgattgcgattcatgtaatagatcctgaaaaagaaggaataccactgaaa
aaggttatggatgcatgtgctgcctgcttcgagcaaaggacaacattcactcagcaagtt
ttggcaaaagcactaaaccaactggttgaacagattcccctacctttgctgttcatgcga
actgttatgcaagcgataagtgcatttcctgccttggtggattttgtgatggagatcatg
tcacgccttgttaacaagcagatatggaaatatccgaagttatgggtaggattcctgaag
tgtgctatcctgacaaaacctcagtcctatggtgtgttactgcagttaccagctccacaa
ctcgaaaatgccctgaataagaaccctctactgaaggcgcccttggtcgagcatgccagc
cagccaaacgtgcgatcaactctcccgagatctatcttggtggttctgggtctcgccgaa
gatcaacagcagcagcccgcacctgaggcacagagcagccagaaccaggccgcggagacc
agcagctccgccgcagaggccgcgacggaagtaactcaggaatcctccgccgccagttga
DBGET
integrated database retrieval system
