Triticum dicoccoides (wild emmer wheat): 119353577
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Entry
119353577 CDS
T07278
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119353577
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119353577
03041 Spliceosome [BR:
tdc03041
]
119353577
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119353577
Spliceosome [BR:
tdc03041
]
Complex B
Other components
Prp19-related factors
119353577
Complex C
119353577
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
ARM_TT21
TPR_15
ARM_TT21_C
TPR_5
TPR_16
Motif
Other DBs
NCBI-GeneID:
119353577
NCBI-ProteinID:
XP_037476094
LinkDB
All DBs
Position
2A:96802978..96808366
Genome browser
AA seq
933 aa
AA seq
DB search
MPSAAAGPAEMALAPPAKAAALPFAGISPDLYPTEDDLPYEEEILREPFKLKGWWRYLVA
RAAAPFAKRAVIYERALKALPGSYKLWHAYLRERLDHVRPHPISHPAYASLNNTFERALA
TMHKMPRVWVLYLTSLLDQRLLTRGRRNFDRALRALPVTQHDRIWPLYLRLASLPACPVE
TSFRVFRRYLQFDPSHAEDFIEFLVSAERWQEAADRLASVLNDDGFRSVKGKTRHQLWLE
LCDILTKHADEVAGLKVDAILRGGIRKFTDEVGKLWTSLADYYVRRTLYEKARDVFEEGV
SSVMTVQEFSVVFEAYTQFEQSMLAAKLEAAEEDGAAGSDEGEKGGKKNKVEKLEKELAA
CWLNDEDDTDLRLARFERLLDRRPELLSSVLLRQNPHNVEEWHRRVKLFDKDPAKQVATY
VEAVKTVDPMKAVGKPHTLWVAFAKMYEKHNRLDSAEDIFKKATQVNYKAVDHLATIWCE
WAEMELRNQHFDKAIELMRLATAEPSVEVKRRAAAEGDEPVQLKLHKSLKLWSIYVDLEE
SLGSLETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKD
IWVTYLTKFVKRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNV
YDEAVRAVPNTEKMSMYEIYIARAAELFGVPRTRQIYEQAIESGLPDKDVMVMCMKFAEL
ERNLGEIDRSRAIYIHASNYADPNSHPEFWKKWNDFEIQHGNEDTFREMLRIKRTVAASR
SQTHFILPEYLMQRDQRLNMDEAVDTLTRAGVPQDEMAALERQLASGPSPAPAAAPSTST
TPANRMMNFVSAGVEARAESSTQQAAANNEDIELPDEESDEEDDVQIAERAVPEAVFGEL
GKRAAESREESSSAQENNEQQLGALERIKRRRQ
NT seq
2802 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcggccgccgcgggtccggcggagatggcgctggcgccgccggcgaaggcggcc
gcgctcccgttcgccgggatctcgccggacctctacccgacggaggacgacctgccctac
gaggaggagatcctgcgggagcccttcaagctcaaggggtggtggcgctacctcgtcgcc
cgcgccgccgcgcccttcgccaagcgcgccgtcatctacgagcgcgcgctcaaggcgctt
ccggggagctacaagctctggcacgcctacctccgcgagcgcctcgaccacgtgcgcccg
cacccaatctcccacccggcctacgcctccctcaacaacaccttcgagcgggcgctcgcc
accatgcacaagatgccgcgcgtctgggtcctctacctcacctcgctgctcgaccagcgc
ctgctcacccgcggccgccgcaacttcgaccgcgccctccgcgcgctgcccgtcacgcag
cacgaccgcatctggccgctctacctgcgcctcgcctcgctcccggcctgccccgtcgag
acgtccttccgcgtcttccggcgctacctccagttcgacccctcccacgccgaggacttc
attgagttcctcgtctcggccgaacgctggcaggaggcagccgaccgcctggcctccgtg
ctcaacgacgatggcttccgctctgtcaaggggaagaccaggcaccagctctggctcgag
ctctgcgatatcctcactaagcatgctgatgaggtcgcagggctcaaggtggatgccata
ctgcggggcgggatacgcaagttcaccgacgaggttggcaagttgtggacctcgctcgct
gattactatgtcaggaggaccctctatgagaaagcaagggacgtcttcgaggagggggtt
tcttcagtgatgacagtgcaggagttcagtgtggtgtttgaggcttatacacaatttgag
cagagtatgcttgcggcaaagctggaggcagctgaagaggatggggctgcggggagcgac
gagggtgagaaagggggcaagaagaataaggtggagaagctagagaaggaacttgcagcg
tgttggttgaatgatgaagatgacactgatttgaggctggcaaggtttgagcggctattg
gatcgcagaccagagctccttagcagtgtcctgttgagacagaatccacataatgtggag
gagtggcacaggagagttaaactttttgacaaggatcccgcaaagcaagtagcgacatat
gtcgaggctgtgaaaactgtggacccaatgaaggcagttgggaaacctcatactctatgg
gtggcatttgcaaagatgtatgagaaacataaccgcttagatagtgctgaagatatcttt
aaaaaggccacacaagtgaactataaagcagtggaccacttggctactatttggtgtgaa
tgggccgaaatggagctccgcaaccaacattttgacaaggcaattgagctgatgaggtta
gccacagcagagccctctgttgaggtgaagaggcgagctgctgcggagggtgacgagccg
gtccagctgaaattacataaatctctgaaattatggagtatctatgttgacctggaggag
agccttgggtcgttggaaacaacccgtgctgtttatgagagaatattagatttaagaatt
gccactcctcaaataattcttaattacgcatttcttcttgaggagaacaagtatttcgaa
gatgcatttaaagtgtatgaaagaggtgtaaaaatattcaagtatccccatgttaaggat
atttgggtgacctacctcacaaagtttgtaaagcggtaccagcgaagcaagttagagcgg
gcaagagagctgttcacggaagctgtcgaaaaggctccgccgcacgaaaagaaggccttg
tatttgcaatatgctaaactggaggaagactacggcctcgcaaaacgtgccatgaatgta
tatgatgaagctgtaagggctgttcccaacactgaaaagatgagtatgtatgaaatatac
attgcacgtgctgctgaactttttggtgttccaaggaccagacaaatatacgagcaagct
atagaatctggtctcccagacaaagatgttatggtgatgtgcatgaagtttgcggaactt
gaaagaaatcttggagaaatcgaccgttcccgggctatttatatccacgcctccaactat
gctgatccaaattctcacccagagttctggaaaaaatggaacgactttgagatccaacat
ggtaatgaagatacattcagggagatgcttcgcatcaagcgtacagtggccgctagccgc
agtcagactcatttcatccttccggagtacctgatgcaaagggaccagaggctaaacatg
gatgaggcggtcgacactctgacgcgtgccggtgtcccgcaggatgagatggccgcctta
gaaaggcagctagcttctggaccatccccggcgccagcagcggctccaagcaccagtacg
actcctgcaaacagaatgatgaactttgttagtgccggagtagaggcacgggccgagagc
agcacgcaacaggctgctgctaacaacgaggacatcgagctgcccgacgaagagagcgac
gaggaggacgatgtccagatcgcggagcgggctgtccctgaagccgtgtttggcgagctc
ggcaagagagccgcagagagcagggaggaaagctctagtgctcaagagaacaacgagcaa
cagctgggtgctctcgagagaatcaagcgaaggcgtcaatag
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