Triticum dicoccoides (wild emmer wheat): 119353683
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Entry
119353683 CDS
T07278
Name
(RefSeq) DExH-box ATP-dependent RNA helicase DExH10-like
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119353683
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119353683
03041 Spliceosome [BR:
tdc03041
]
119353683
03009 Ribosome biogenesis [BR:
tdc03009
]
119353683
03016 Transfer RNA biogenesis [BR:
tdc03016
]
119353683
Enzymes [BR:
tdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119353683
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
119353683
Spliceosome [BR:
tdc03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
119353683
Complex C
U4/U6.U5 tri-SnRNP related factors
119353683
Ribosome biogenesis [BR:
tdc03009
]
Eukaryotic type
Pre-60S particles
Helicases
119353683
Transfer RNA biogenesis [BR:
tdc03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
119353683
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
Helicase_C
DEXQc_Suv3
ResIII
ArAE_1_C
nSTAND3
Motif
Other DBs
NCBI-GeneID:
119353683
NCBI-ProteinID:
XP_037476231
LinkDB
All DBs
Position
2A:110664453..110672146
Genome browser
AA seq
1006 aa
AA seq
DB search
MEEVENSSKRKAPELSSEDNSSAAVLDEQQSLPGSTAKRPNLARSCIHEVAVPNDYDLSK
DEAVHGTLSNPAFNGEMAKTYPFQLDPFQSISIACLERNESVLVSAHTSAGKTAIAEYAI
AMSFRDKQRVIYTSPLKALSNQKYRELTHEFSDVGLMTGDVTLQPNATCLVMTTEILRAM
LYRGSEVIKEVGWVIFDEIHYMKDRERGVVWEESIVFLPPAIKMVFLSATMSNATEFAEW
ICNLHKQPCHVVYTDFRPTPLQHYVFPIGGSGLYLVVDENGQFREDNFLKLQDTFAKQPS
QPDGRKGGGPKASGRIAKGGNASGTSDIYRIVKMIMDRKFQPVIIFSFSRRECEHHAMSM
SKLDFNTQEEKDNIEQVFRSAIFCLSEEDRGLPAIELMLPLLKRGIAVHHSGLLPLIKEL
VELLFQEGLVKALFATETFAMGLNMPAKTVVFTSVKKWDGDSNRYIASGEYIQMSGRAGR
RGMDARGICVIMIDEKMEMSVIKDMVLGKPAPLISTFRLSYYTILNLLSRAEGQFTAEHV
IRNSFHQFQYEKALPEVVQKITKLENEATLLDSSGENDLAEYHKLGLDISELEKKIMSEM
IRPERALLYLVPGRLVKVRDGSTDWGWGVVVNVVKKPPASSTLPPALSAPRNNYIVDTLL
HCSSSSSENGANGPRSKPCPPRQGEKGEMHVVPVPLPLLSGLSSVRISIPTDLRPPEARQ
NILFAVQELGKRYPQGLPKLHPITDMGIEEPELVDLVHKLDGLEEKLCSHPLNKSDQSEQ
QLSWYQRKAELNHEIQQLKSKMRDSQLQKFRDELKNRSRVLKMLGHIDTDGVLQLKGRAA
CLIDTGDELLITELMFNGTFNELDHHQVASVVSCFVPCEKSSEQIRLRNELSKPMMQLSE
AARKIAEVQRECKLDVNVEEYVESTCKPYLMDVIYCWSKGATFGEVIEMTDIFEGSIIRL
VRRLDEFLNQLKAAAEAVGEVNLEKKFGLASESLRRGIMFANSLYL
NT seq
3021 nt
NT seq
+upstream
nt +downstream
nt
atggaagaggtggagaattccagcaagcgtaaggcacccgagctgagctcggaggacaat
tcctccgctgctgttctggatgagcagcagtcgctgcctggctcgactgccaagcgtccc
aaccttgcccggtcgtgcatccatgaggtcgcagtccccaacgactacgatttgtccaag
gatgaggccgtacacgggaccctttcaaaccctgcgtttaatggggagatggccaagaca
tacccgtttcagctcgaccccttccagagcatctccatcgcgtgcctggagcggaacgaa
tctgtcttggtctcggctcacacctctgctgggaagacggccatcgctgagtacgccatt
gcaatgtcgttcagagacaagcagagggtgatatacacctctccgttgaaggctcttagt
aatcagaagtacagggagcttactcacgagttctctgatgttggattgatgactggtgat
gtcacgcttcagccaaatgctacttgcctggtcatgacaacagaaatcctgagggcgatg
ctttataggggctccgaggtgatcaaggaagttggttgggttatatttgatgagatccac
tacatgaaggatcgtgagagaggcgttgtgtgggaagagagtatagttttcctgccccct
gccatcaagatggtcttcctttctgctaccatgtcaaatgcaaccgagttcgctgagtgg
atatgcaatctgcataagcagccttgtcacgtggtgtacacagacttcaggccaacaccg
ctacagcactatgtgttcccaataggtgggtctggtctctaccttgtagtggatgaaaat
ggtcagttcagggaggataattttctaaagctgcaagacacatttgcaaagcaacctagt
caaccagatgggaggaagggcggtgggcctaaagccagtggccgaatcgcaaaaggtgga
aatgcttctggaacatctgacatatacagaattgtcaagatgattatggatcgcaagttt
caaccagtcataattttcagctttagtagaagagaatgtgagcaccatgccatgtcgatg
tcaaaacttgatttcaacactcaggaagaaaaggataacatcgagcaggttttccgtagt
gctattttctgtttaagtgaggaagatagagggttacctgctatagagttgatgttgcct
cttcttaaacgaggtattgcagtacaccattctggactgcttccattaattaaagagctg
gtggaattgctcttccaagaaggtcttgtgaaagctctttttgctactgagacgtttgcc
atgggcctgaacatgcctgcaaaaacagttgtcttcacatctgtcaagaaatgggacggt
gatagtaaccgctatattgcttctggagaatatatacagatgagtggaagagctggtcga
cgtggcatggatgcacgtggtatttgtgttataatgattgatgagaagatggaaatgagt
gttatcaaggacatggtgttaggtaaaccagcacctctcatcagtacttttcgactgagc
tactacactattctgaatttactgagtcgtgcggagggccaatttaccgctgaacatgtg
atccggaattcattccaccagtttcagtatgaaaaggctttacctgaagtcgttcagaag
attacaaagttggaaaatgaagctacattgctggactcttctggagagaatgatcttgcc
gagtatcacaagttagggcttgatatatctgaacttgaaaagaaaatcatgtctgagatg
attagaccagagagagctttgttatatttggtccctggaaggctggttaaagtcagagat
ggctcaacagactgggggtggggtgtggtcgtaaatgttgtgaagaaacctccagcatct
agtactctcccccctgcattaagtgcacctcgcaataactatatagtggataccttgctt
cattgttcttcaagttcaagtgagaatggagccaatggaccacgttcaaagccatgccca
cctcgccaaggggagaagggagaaatgcatgtggtgcctgtaccattacctttattatct
ggtctaagcagtgttagaatcagcattccaactgatctacgaccacctgaagcgagacaa
aacatactctttgcagttcaagaactaggaaaacgttacccccaagggcttccaaagcta
catccaattacggacatgggtattgaagaacctgaattagttgacttggttcataaactt
gatggtctcgaggagaaattatgttctcatcctcttaataagtctgatcaaagtgagcag
caactgtcatggtaccaaagaaaggctgaactgaatcatgaaattcaacaactaaagtca
aagatgcgggattcacagctgcaaaaatttagggatgaactaaagaaccggtctcgcgtt
ctgaagatgcttggtcacattgacacggatggtgttctccagctaaagggacgtgctgcc
tgtttaatagacactggggatgagctgcttatcactgaacttatgttcaacggtacattt
aatgaacttgatcaccatcaagttgcttctgttgttagctgctttgtaccgtgtgagaag
tcaagtgagcaaatacgcctgagaaatgagctttctaagccaatgatgcaactctcggag
gctgctagaaaaatagctgaggtacaacgagaatgcaaattggacgtaaatgtagaggaa
tacgttgaatcaacttgtaaaccctatctgatggatgtcatatactgctggtcaaagggc
gcgacctttggagaggtgatagaaatgactgacatttttgaaggaagcatcataaggcta
gttaggaggctggatgaatttctaaatcagctaaaagctgctgctgaagccgttggggag
gtaaaccttgagaagaagtttgggttggcgagcgagagcttgcgtcggggtatcatgttt
gccaactcattgtacctgtga
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