Triticum dicoccoides (wild emmer wheat): 119354394
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Entry
119354394 CDS
T07278
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03013
Nucleocytoplasmic transport
tdc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119354394
03015 mRNA surveillance pathway
119354394
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119354394
Enzymes [BR:
tdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119354394
5.6.2.5 RNA 5'-3' helicase
119354394
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119354394
mRNA cycle factors
Common to processing body (P body) and stress granule
119354394
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NPHP3_N
nSTAND3
Helicase_RecD
ATPase
PhoH
SRP54
AAA_16
AAA_22
AAA_32
AAA_25
Ribosomal_S13_N
Hydin_ADK
AAA
Motif
Other DBs
NCBI-GeneID:
119354394
NCBI-ProteinID:
XP_037477029
LinkDB
All DBs
Position
2A:272929238..272947033
Genome browser
AA seq
1268 aa
AA seq
DB search
MATQPPSSAAAADLYETASQPDPSASAAGDAYTFLEFNTQGDDFEYPDFPELSQPARSAP
PPPAPVTSSASSSWPAPPLPPDALPDADLAPQDSTPPASSSSPSPRLSASKARAGAAVAD
GLAAGVAALSFEEPPGAGTGDDGYDYGKGDFVEHACRYCGIHNPACVARCNVPSCRKWFC
NSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKAENVV
VLLCREPCLNVNALKDMNWDLSQWTPLIDDRCFLSWLVKVPSEQEQLRARQISAQQINKV
EELWKTNPDASLEDLEKPGVDDEPQPVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQS
KDSVTVRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGGTSHPAWQSVGHVIKLT
AQEEVALELRASQGVPVELNHGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLL
GHEVEHQIIRNTLPRRFGAPGLPELNASQVLAVKSVLQKPVSLIQGPPGTGKTVTSAAIV
YHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQVR
HLDNSEKSEMHKLQQLKDEQGELSSSDEKKYKALKRATEREILQSADVICCTCVGAGDPR
LSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSL
FERLVILGVKPFRLQVQYRMHPCLSEFPSNCFYEGTLQNGVTVNERQSSGIDFPWPVPNR
PMFFYVQMGVEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIV
NYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALT
RARYGIVVLGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRR
LFLGGGQGVMQGSAFGTVGSGDKRSGRGKGYPFVPFGPPNGAHKPGVHPSGYPLARMPYP
PFPGSPHSQPYAIPTRGSLHGPIGAVPAVPQPVNRNFGAPRANTGGPIGGHLAAHQQNSQ
QAMGSVGPTYNFAGDPSSQPSGGGLMSQSGLMAQMPVEGLSQTIRDGFPVGGMSQDFFGD
DFKSQGSHVAYNIADFSTQASQGGYAVEYTQGPQSGYPGNYLNQSAHPGYPHMGATNDIV
SQDHMAHGSHGMFTQAGYNDQSQDESSQMHYGLGAPGHLQSQSMMNPMYSQSYAHYNTQP
QSLQPPPQ
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcagccgccttcctcggctgcggccgccgacctctacgagacggcctcgcag
cccgacccctccgcctccgccgccggggacgcatacaccttcctggagttcaacacgcag
ggcgacgacttcgagtaccccgacttcccggagctctcccagcccgcgcgatccgcgccg
ccgcccccggcccccgtcacctcctcagcctcttcttcctggccggctccgcccctgccg
cccgacgctttgccggacgccgatctcgcgccgcaggactcgaccccgccggcctcttcg
tcctcgccgtcgccgcggttgtcggcgtcgaaggcaagggcgggggcggcggtggcggac
gggctcgccgcgggggtcgcggccctcagtttcgaggagcctcctggcgccggaacgggg
gatgacgggtacgattatggcaagggcgacttcgtggagcatgcctgccggtactgcggg
atccacaaccctgcgtgtgtcgcgcgctgcaacgtgccatcctgccgcaagtggttttgc
aactcgcgagggaacacctctggctcccacatcgttaaccacctggtcagagcaaaacat
aaggaagtctgccttcacaaggatagccctctgggagaaacgattcttgaatgctacaat
tgtggctgccggaatgtatttctgcttggttttatctcagcaaaggcagagaatgttgtt
gttcttctgtgtagagagccctgcttgaatgttaatgcgttgaaggatatgaattgggat
ctcagtcagtggacacctcttattgatgacaggtgtttcttatcgtggcttgtcaaggtt
ccttcagaacaggagcagttgagagctcgccaaattagtgcccagcaaattaacaaagtg
gaagagctctggaaaacaaatcctgatgcctcccttgaagatcttgaaaaacctggagta
gatgatgaaccccagccggtggttttgaagtatgaagatgcttaccagtatcaaaatgtt
tttgctccgctgataaagcttgaggctgattacgacaagatgatgaaagagtcacagagc
aaggacagtgtaactgtgaggtgggacattggactgaacaagaagcgtgttgcctatttt
gtctttccaaaggaagataatgaattgagacttgtccctggagatgagctacggctgaga
tattctggtggtacttcacaccctgcatggcaatctgtggggcacgtgattaaactcact
gcacaagaggaggtagcacttgagcttcgtgctagtcagggagtgcctgttgaactgaac
catggatttagtgtggattttgtttggaagagtactagctttgataggatgcaaggggca
atgaagacttttgctgtagatgagacaagtgtcagtgggtacatatatcatcaccttttg
ggccatgaagttgagcatcagataatacgcaatacactaccaagacgctttggtgcgcca
ggacttccagaattaaatgcttcccaggtcttggcagttaaaagtgttctccagaagccc
gttagtttgattcaaggtccacctggcactgggaaaactgttacatcagctgcaattgtg
taccacatggcaaaacaaggccaagggcaggtccttgtatgtgcaccaagtaatgttgct
gttgatcagttggcagagaagataagctcaacaggtctcaaggttgttcgactttgtgcg
aaatctagagaagcagtttcttcacctgttgagcatcttacacttcattatcaggttcga
catctcgataattccgagaagagcgaaatgcataagctacagcaactaaaagacgagcaa
ggagaattgtcgagcagtgatgagaagaagtacaaggcactaaaacgagccactgaaaga
gagatattacaaagtgctgatgtgatttgctgcacctgtgttggtgctggagaccctcgt
ttgtcaaacttccgttttcgccaggttcttatcgatgagtctacacaggcgacagagcca
gaatgtcttattccattggttcttggtgttaagcaggttgttcttgttggagatcattgc
caactgggtccagtcatcatgtgcaaaaaggcagcccgagcaggattagcacaatctctc
tttgagcgccttgttatccttggagtcaagccattcaggctacaggtccaatatagaatg
cacccttgtctttcagaatttccatccaactgtttttatgaaggcacactgcaaaatggg
gtaaccgtaaatgagagacagtcatctggaattgactttccttggcctgttccaaatcga
ccgatgttcttctatgtgcagatgggagtagaagagataagtgctagtgggacatcttac
ctcaataggactgaagctgcaaatgtagagaaaattgtaactacattcttaagaagtggt
gttgtgccaagccagatcggagttatcacaccttatgaagggcagagggcgtatatagta
aattatatgtcaaggaatggctctcttcgccaacaactttacaaggaaattgaggtggca
agtgtcgactccttccagggaagagagaaagattacattattctgtcttgtgttagaagc
aatgaacaccagggtatcggctttcttaatgatccacgcaggttaaatgttgcattaact
cgtgctaggtatggtatagtcgttcttgggaatcctaaagttctaagcaagcagcctctt
tggaatagtttgttgacacattacaaggagcatgagtgcttggtagaaggacctttgaac
aatttgaagcagagtatggtgcaatttcaaaaaccaaaaaagatctacaatgatcggaga
ctgttcctgggtggtggtcaaggtgttatgcagggatctgcctttggcactgtaggctca
ggagataagagaagtggtaggggaaaaggatacccatttgttccatttgggccaccaaat
ggggctcacaaacctggtgtgcacccatcaggctatcctttagctcgcatgccttatcct
ccatttcctgggtctccacattctcaaccctacgcaattccaacccggggatccctgcat
ggacccattggagctgttccggcggtgcctcaacctgttaataggaactttggtgctcct
cgtgcaaataccggtggccctattggtggtcaccttgctgcccatcagcagaactctcag
caagctatgggaagtgtggggccaacttataactttgctggtgatccgagcagtcagcct
tctggtggaggcctgatgtcccaatctggactgatggcacagatgcctgtcgaaggtcta
agtcaaacaatccgtgatgggtttcctgttggtgggatgtctcaggacttctttggagat
gatttcaagagccaaggatctcacgtagcatacaacattgcagatttttctactcaggct
tctcaaggaggttatgctgttgaatatacacaagggccccaatctggatatcctgggaat
tatttgaaccaaagtgcacatccaggatacccccatatgggtgcaacaaatgacattgta
tctcaggatcacatggcccatggttcacatggaatgtttacgcaagcgggatacaacgac
caatcacaagatgaatcttctcagatgcattatggactgggtgctcctggccatcttcag
tcacagagcatgatgaatcctatgtactctcagtcatatgctcactataacactcaacct
cagtctcttcagcctccaccgcagtga
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