Triticum dicoccoides (wild emmer wheat): 119354807
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Entry
119354807 CDS
T07278
Name
(RefSeq) pre-mRNA-splicing factor ATP-dependent RNA helicase DEAH7-like
KO
K12815
pre-mRNA-splicing factor ATP-dependent RNA helicase DHX38/PRP16 [EC:
5.6.2.6
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119354807
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03041 Spliceosome [BR:
tdc03041
]
119354807
Enzymes [BR:
tdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
119354807
Spliceosome [BR:
tdc03041
]
Complex C
Other components
Step II factors
119354807
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
OB_NTP_bind
HA2_C
Helicase_C
DEAD
HA2_N
AAA_22
AAA_19
Flavi_DEAD
AAA_24
SLFN-g3_helicase
AAA_30
ResIII
AAA_16
nSTAND3
T2SSE
NB-ARC
Sigma54_activ_2
AAA_7
ABC_tran
Cas3-like_C_2
Motif
Other DBs
NCBI-GeneID:
119354807
NCBI-ProteinID:
XP_037477447
LinkDB
All DBs
Position
2A:434168053..434175698
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AA seq
1263 aa
AA seq
DB search
MSSDGRLDLDATTSTLGPEDDTAQGLILPTKDKVMYRPPPGRSALGLDLLAHKKREKEGN
NSFKRPPEKVVTAASSMDEDERPGSTENDASSLSGGDRGSVARRYRGTNSSEKTLSKEST
VTDENERGLTPRHRDESHRQQTPASRYELNDDRGSRDKRGARETSASIGYSSSGRRGYRD
DRESNSRRNERSRSTSIDYTNKRSRDDYSSRSSRTPARSDWDSGRWEWEDTPRREYRDDR
PGSQRHYPTRSPMLAAASPDARLVSPWLGGNTPRSAASPWDHVSPSPAPVRASGSSKGSS
YSSSSGRSHQLTFSNDAEADRSPSAADRNYEITEEMMQDMDYNADRAWYDCEEHNTVFDG
DNYAADDSSYKKKEAQLPKKLTRKDGSLMTLSQSKKLSQMTADNAQWEDRQLLRSGAVRG
TEVQTEFDDEDERKVILLVHDTKPPFLDGRVVYTKQAEPVMPLKDPTSDMAIIARKGSVL
VREIREKQSQNKSRQRFWELAGSNLGNILGVEKTSEQVDADTAVVGDQGEIDFKEEAKFS
QHLKEKAEAVSDFAKSKSLSQQRQYLPIYTVRDDLLQVVRENQVVVVVGETGSGKTTQLT
QYLHEDGYTTTGVVGCTQPRRVAAMSVAKRVSEEMETELGDKVGYAIRFEDVTCSSTIIK
YMTDGVLLRETLKDADLDKYRVIVMDEAHERSLNTDVLFGILKKVVARRRDFKLIVTSAT
LNADKFSKFFGGVPVFNIPGRTFPVNILFSKTPCEDYVEAAVKQAMTIHITSGPGDILIF
MTGQEEIEATCYALAERMEQLISSSTKNVPKLSILPIYSQLPADLQAKIFQKAEEGTRKC
IVATNIAETSLTVDGIFYVIDTGYGKMKVYNPRMGMDALQVFPCSRAAADQRAGRAGRTG
PGTCYRLFTESAYQNEMLPNPVPEIQRTNLGNVVLLLKSLKVENLLDFDFMDPPPQENIL
NSMYQLWVLGALNNVGGLTEIGWKMVEFPLDPTLAKMLLMGEKLECLDEVLTIVSMLSVP
SVFFRPKDRAEESDAAREKFFVPESDHLTLLNVYLQWKSNQYRGDWCNDHFLHVKGLRKA
REVRSQLLDILKALKIPLTSCHMEWDVVRKAICSAYFHNSARLKGIGEYVNCRNGMPCHL
HPSSALYGLGYTPDYVVYHELVLTTKEYMQCVSAVDPQWLAELGPMFFSVKDTDTSLLDH
KKRQKEEKTAMEEEMEKLRQEQAEAALVEKERERRKRAKQQQQISMPGLKKGSTYLRPKK
MGL
NT seq
3792 nt
NT seq
+upstream
nt +downstream
nt
atgagttccgacggcaggctggacctcgacgcgacgacaagcaccctcggcccggaggat
gacacggcgcagggtctgatactgccgaccaaggataaggtcatgtaccggcctccgccg
gggagatccgcgctaggtttggacctgctcgcgcacaagaaaagagaaaaggaaggtaac
aattcatttaagcggcctcctgagaaggtagtgacggctgcttcttctatggatgaagat
gagaggccaggatctacagaaaatgatgcaagcagcctgtccggtggtgaccgtggcagc
gtggctcgccgttatcgaggaaccaattccagtgagaaaacattgtcgaaagaatctaca
gtcactgatgagaatgaaaggggtcttacacccagacatcgagatgaatcccatcggcaa
cagacccctgcctctaggtacgaactgaatgatgacagaggatcccgtgacaaacgtggt
gcacgcgagacatctgcatccattggttatagtagcagtggaaggcgaggataccgtgat
gacagggaatcgaatagtaggcgtaatgaacggagcagatctacatctatcgactacaca
aacaaaagaagtcgggatgactatagctcgagaagctcaagaacacctgcaagatctgac
tgggacagtggccgatgggaatgggaagatacacctcgccgggagtaccgtgatgatcgt
cctggctcccaaagacattatccaacacgatctcctatgctggctgctgcatctcctgat
gcacgattggtgtctccttggctaggtgggaatacaccccgttccgcagcatccccttgg
gatcatgtttctccctcacctgctcctgtgagggcttcaggttcatcaaaagggtcttcg
tattcaagttccagtggaagatctcatcagcttaccttttcaaatgatgctgaagctgat
agaagcccctcagctgctgataggaactatgagattaccgaggaaatgatgcaagacatg
gattataatgctgaccgtgcttggtatgattgtgaagaacacaacactgtgttcgatggt
gataattatgctgcagatgatagctcctacaaaaagaaggaagcacaattgcctaagaaa
ttgactcgtaaagatggtagtctgatgaccctttctcagagcaagaaattatcacagatg
actgctgataatgctcagtgggaggacagacaattgttgaggtctggagctgttagagga
acggaggtgcagacagaatttgatgatgaggacgagcgtaaagtaatacttcttgttcat
gatacaaaacctcccttcctggatgggcgagttgtatacacaaagcaagcagagcctgta
atgccactgaaggatccaacatctgatatggctatcattgcacgaaaaggttctgttttg
gttagggaaattcgtgaaaagcagagccagaacaagtcgcggcaacgcttctgggagctt
gctggatctaatcttggaaatatattgggcgttgagaaaacgtctgaacaggttgatgca
gatactgctgttgttggtgatcaaggggagattgatttcaaggaggaagcaaagttttcg
caacacttgaaggaaaaagcagaagctgtcagtgattttgcaaaatctaaatctctttct
cagcaaagacaatatcttcccatatatactgttcgagatgacctgctacaggttgtgcgt
gaaaatcaagtagttgtggtcgttggtgaaactggttctgggaagaccactcaacttact
cagtatctgcatgaggatggatataccacaactggtgttgttggctgtactcaaccgaga
cgtgtggctgccatgagtgttgccaagcgggtcagtgaagaaatggaaaccgaactgggt
gataaagttggatatgctatccgatttgaggacgtcacttgttctagcactataataaag
tatatgacagatggagtgcttcttcgtgaaaccttgaaagatgctgaccttgataaatat
cgtgttatcgtcatggatgaagcacacgaaagatccctcaatactgatgttttgtttggc
atattgaagaaggttgttgcacgtcggcgggattttaagctaattgtcacatctgcaacc
ctaaatgcagacaaattctcaaagttctttggaggtgtgcctgtatttaacattccaggc
aggacatttccagtaaatatcttgtttagcaaaacaccatgtgaagattatgtggaagcg
gcagtgaagcaggccatgacaattcacataacgagtggccctggagacatcctcatcttc
atgaccgggcaggaagagatcgaggctacttgctatgctcttgctgagcgcatggagcag
ctaatatcgtcatccacgaagaatgtacccaagctctccatcttgccgatttactcgcag
ttgcctgctgacttgcaggccaagatctttcagaaggcagaagagggcactcgcaaatgc
attgttgctaccaatattgctgagacgtccctcacagtggatggtatcttctatgtcatt
gataccgggtatggaaagatgaaggtatacaatccacggatgggcatggatgctcttcag
gtttttccgtgtagtcgagcagctgcagaccagcgtgcaggacgtgctggaagaaccggc
cctggcacatgctacaggctgttcacagaatcagcttaccagaacgagatgctccctaac
cccgtgccagagattcaaaggactaacctgggaaacgtggttctcttactgaagtccctc
aaagtcgaaaacttgcttgattttgacttcatggacccacccccccaggagaatatcctc
aactccatgtaccagctctgggtgttgggcgccttgaacaatgttggtggacttacagaa
ataggttggaagatggtggagttcccattggacccgactctagcaaagatgcttctcatg
ggggagaagctggaatgccttgatgaagtattgaccattgtatccatgctctcagtaccc
tcagttttcttccggccaaaagatcgagcagaggagagcgatgccgcaagggaaaaattc
tttgtcccagagtctgaccacctaacactcctgaatgtatacctgcagtggaagtcaaac
caatatcgaggagactggtgtaatgaccatttcctccatgttaagggtctccgtaaggct
cgggaagtgagatctcaactgctagacatactgaaagccctgaagatcccactgacatca
tgccatatggaatgggacgtggtaaggaaagctatctgctcggcgtacttccataactcg
gcaaggttgaagggcataggagagtatgtcaactgccggaatgggatgccgtgccacctg
catccgagcagtgctctgtatggtctcgggtacacccctgactatgtggtgtaccacgag
cttgtcctgacaaccaaggagtatatgcagtgtgtgagcgcagtggatccgcaatggctg
gcggagctgggtcctatgttcttctctgtgaaagacacggacacctcccttctggaccac
aagaagagacagaaggaggagaagacggccatggaagaggagatggagaagctgaggcag
gaacaggcggaggcagcactcgtggagaaggagagggagcgacggaagagagccaagcag
cagcagcagatctctatgccgggtctgaagaaaggttcgacatatctgaggcccaagaag
atgggtttgtag
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integrated database retrieval system
