Triticum dicoccoides (wild emmer wheat): 119355431
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Entry
119355431 CDS
T07278
Name
(RefSeq) poly(A)-specific ribonuclease PARN-like isoform X1
KO
K01148
poly(A)-specific ribonuclease [EC:
3.1.13.4
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
119355431
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119355431
Enzymes [BR:
tdc01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.4 poly(A)-specific ribonuclease
119355431
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
Other 3'-5' decay factors
119355431
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
CAF1
Motif
Other DBs
NCBI-GeneID:
119355431
NCBI-ProteinID:
XP_037478132
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All DBs
Position
2A:complement(568623427..568627951)
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AA seq
737 aa
AA seq
DB search
MQCRRRLAPLLRAPPPKTLLPRLLSRLVSSSSPSSPPPSSGGGDEAGDGSVAGVAVKQVT
RGNLAEALEELRARVRDAAFVGIDLEMSGVTSAPWRDTFELDRADVRYLKLRDSAKRFAV
LQLGVCPFRWDPAKSAFVAHPHNFFIFPRKELPYDSSSHEFLCQTTSLDFLAKHQFDFNT
CFHEGISYLSRAQEEEALQKLNVLHHDGLSAFPNTSKQEEDVQLKSTADLLFSERMKIRF
NEWRDAISTNPRVDNHKLGSNKFTTNQFQTVFFKMRPAIMLDGFTSHQLKLIQQVLRKNF
RDLMYVSTFGEDETSEKRVVYTDNNEDSILLMKDVQEDLLRSRKVKVESAIGIRHVIDLI
ASERKLIVGHSCFLDIAQVYSKFIGPLPSSIKDFALAINRIFPHVVDTRHLMSASDAVQH
LMRQKSKALSSAFSLLCPAFHSTAGEASIPAPVRIEVEADETMLSCFASGAKHEAGYDAF
MTGCVFAQLCAHIGVKFEDFTPKENLEMNKKLKKYINLLPPSFNSGTVLDLRTGMERPDA
CYKLRYPAAVHDNIVLIWGFQSGLSAKDIKGCICKVFGPASVATVFSIDSTAVLIQFSKQ
ESVNDFLDLKATLEKQDSAISVLHPLSTILEGGQTRAANYDTYRDICSSSVTKYFFADQA
NAVCSASDTELRGENVDASDAPGTNSVLDETARTLVKQAEGTQHSSKKQDATDISCQDIL
DVLQDGKTLFGKQTRRT
NT seq
2214 nt
NT seq
+upstream
nt +downstream
nt
atgcagtgccgccgccgcctcgcccccctcctccgcgcgccgccgcccaaaaccctcctc
ccccgcctcctctcccgcctcgtctcctcctcctccccctcctccccgccgccctccagc
ggcggcggggatgaagccggggacggcagcgtcgccggggtggcggtgaagcaggtgacg
cgggggaacctggcggaggcgctggaggagctgcgggcgcgggtgcgcgacgccgcgttc
gtcgggatcgacctggagatgagcggcgtcaccagcgccccgtggcgggacaccttcgag
ctcgaccgcgccgacgtccgctacctcaagctccgcgactccgccaagcgcttcgccgtg
ctgcagctcggcgtctgccccttccgctgggaccccgccaagtccgccttcgtcgcccat
ccgcataacttttttatcttccctcgcaaggagctcccatatgacagttcatctcacgaa
tttctctgtcagaccacttcacttgacttcctagcaaaacaccagtttgatttcaacacg
tgcttccatgaaggaatatcttatttatccagagcacaagaagaagaggctcttcagaaa
ctaaatgtactgcatcatgatggactatctgcatttccaaatacttctaaacaggaagaa
gatgtgcagttaaagagtactgctgatcttcttttctcagagagaatgaagatcagattt
aatgagtggcgtgatgcgataagcaccaaccccagggtggataaccataagttaggaagc
aataaattcaccaccaaccaatttcagacagttttcttcaaaatgcgcccagctattatg
cttgatgggtttacatcacatcaattaaaattaattcaacaggttttaagaaaaaacttt
agagacctcatgtatgtttctacatttggtgaggatgaaacatcagaaaagagagtagtt
tatacagacaacaacgaagacagtatattattgatgaaagatgtgcaagaagatctactc
agaagcagaaaagtaaaagtggaatcagcaataggaatccgccatgtcattgatcttatt
gcctcagaaagaaaattgattgttggtcacagttgtttcctagatattgcacaagtatac
tccaaatttattgggcctcttccctcatccattaaggattttgccttggctatcaacaga
attttcccacatgttgtagatactaggcatcttatgtctgccagcgatgcggttcagcat
ctgatgaggcagaaaagcaaagcactttcttcagccttctcattattgtgccctgcattt
cattcaactgctggggaagcatctatcccggctcctgtgagaatagaagtcgaggcagat
gaaacaatgttatcatgctttgcttcaggtgctaagcatgaggcagggtatgatgcattc
atgactggatgtgtttttgcgcagttgtgtgcccatattggcgtcaaatttgaagacttc
acacctaaggagaacctagagatgaataagaagctgaagaagtatatcaatcttctgccc
cctagctttaacagcgggacagtgcttgatttgcgtactggaatggagagaccagatgca
tgttataagcttagatatcctgctgctgtgcatgataacattgttctcatctggggattc
caatctgggctgagcgcaaaggatataaagggctgcatctgcaaagtgttcggcccagct
tcagtagcgacagtcttctcaatcgattccactgctgttctcattcagttcagtaaacaa
gagtctgtaaatgatttcttggatctgaaggctacgttggagaagcaagatagtgctatt
tcagtcttgcaccctctttcaactatattagaaggaggccaaacacgagctgcaaactat
gatacctacagagacatctgcagctcatctgtaacaaagtatttctttgctgatcaagct
aatgcggtctgttcggcttcagatactgagctcagaggtgagaacgtagatgccagtgat
gcaccgggaacaaatagcgttcttgatgaaactgcgcgtaccttggtaaagcaggcagaa
ggaacccagcatagttccaagaagcaagatgctactgatatttcatgccaagacatcttg
gatgtgcttcaagatggcaaaactttgttcggcaaacaaaccaggaggacatga
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