Triticum dicoccoides (wild emmer wheat): 119362199
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Entry
119362199 CDS
T07278
Name
(RefSeq) symplekin-like
KO
K06100
symplekin
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09122 Translation
03015 mRNA surveillance pathway
119362199
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdc03021
]
119362199
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119362199
Transcription machinery [BR:
tdc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119362199
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA processing factors
3' end processing
Cleavage stimulation factor (CSTF) complex
119362199
U7-dependent histone pre-mRNA processing factors
119362199
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Symplekin_C
SYMPK_PTA1_N
HEAT_2
HEAT_EZ
Adaptin_N
Motif
Other DBs
NCBI-GeneID:
119362199
NCBI-ProteinID:
XP_037483298
LinkDB
All DBs
Position
2B:complement(68980115..68990025)
Genome browser
AA seq
1259 aa
AA seq
DB search
MAVALPPAFPPHGLPQPDASAGDMGPRLLQVRGLRRLPLHELVPRLAELRADEAGPVRKV
VIEMIGEIGSKHMVYIPDMMPSLLDLLNDETPAVARQAVKTGTDLFAKVLQELVIQGLFS
SGGIDDSLKSSWEWMLKLKSAVSLMAFQPTSNEGVRLLAVKFVEKTVLMHTPDPNITSDP
PTQATEDMGFNIAWLRGGHPLLNVGDLAMEASQSLGLLLEQLKSPKIRLLSTSMIIVFVT
SLSAIAQRRPSFYGRILPVLLSLDPANTIIKVQVPGAFHALKSAIDACLKCTHSSAEPWR
ARLLEAQNIINQGDSIAANDSNAGRSAGDTSNRAESLPLTETSTDNSNKRSLADDMNNIL
EDDGHSSKRVKQSHDSQEHSEEANKRNTEAASVDSSSNQPTLARTENSEAVYQLIGMFAA
LAAQGDRAAGSLQILSSSIAADLLAEVVMVNMQHLPVSGPEVDQRQHPSTSQSSVAPSRN
ILSGRFPMLEALWKTISETDQAEAPPAKDTALVTSAAGEIIPVLASSPVPSALKTPKEED
ISSAVPLDIETVEAKVPTADATGLSMEIQESSETSHASTEPQGTQEHSGSFVTPLPADNS
SVGISLAQCSETRSPSSSTIDGSQSQFSSLNAPTSQYVLPKLVVTNVDLTDEAKDLLQKE
AFLRILERDKQVESGGSKARLPLLSHLSVEFPLELDPWELLKKHVLSDYVNKEGHELTLG
ILNRLYREAEQDQDFLSSRTATSVYESFVLTIAENLRDMFPASDRSLGKLLCEMPYLPEG
VLKLLEGLCSPGNNEKQDKDLQSGDRVTQGLSAVWNLIMLRPPNRDRCLDIALQSSINRI
DEVRMKAIRLVANKLFPMASISKRIEDFANEKLNSVLEVIPAAESASAAEMGTPEVHQDG
GLENVSSVADALTLMSLYFALCTKKHSLLRRVFEIYGSLPQAAKQAVHRQVPILIRTIRS
SPELLGIISDPPADCRDLLMQVLQTLTDVAVPSQDLISSIKNLYSKTKDTEFLFPVMAHL
PKDEILSVFPNIVNLPVDKFQVALSRILQGSPQHGPILDPSEILIAIHVIDPEKEGIPLK
KVMDACAACFEQRTTFTQQVLAKALNQLVEQIPLPLLFMRTVMQAISAFPALVDFVMEIM
SRLVSKQIWKYPKLWVGFLKCAILTKPQSYGVLLQLPAPQLENALNKNPVLKAPLVEHAS
QPNVRSTLPRSSLVVLGLAEDQQQQPAPEAQSSQNQAAETSSSAAEATTEVTQESSAAS
NT seq
3780 nt
NT seq
+upstream
nt +downstream
nt
atggcggtagccctcccgccggccttccctccgcacggcctcccccagccggacgcttct
gccggggacatgggcccgcgcctcctgcaggtgcgcgggctccgccggctgccgctccac
gagctcgtcccccgcctcgccgagctccgcgccgacgaggccggccccgtgcgcaaggtc
gtcatcgagatgattggtgagattgggtcaaagcacatggtgtatatacccgacatgatg
cccagcctgctggatcttttgaatgatgagacgccggcggtcgcaagacaggctgttaaa
acaggaacagacttatttgccaaagtactgcaagagctcgttatccagggtttgttctca
agtggtgggattgacgattcactcaaatcgtcatgggaatggatgctcaagcttaaatca
gcggtgtcgctcatggcattccagcctaccagcaatgaaggagtcaggttgctggctgtt
aagtttgttgagaaaacagttcttatgcacaccccggatcctaatatcacatctgatcca
ccaacccaagctacagaagatatgggattcaatatagcatggttaaggggaggtcaccct
ctgcttaatgttggtgacctagccatggaagccagccagagcctgggactgttgctagaa
caacttaagtctcctaaaataagattactcagcacttcgatgatcattgtcttcgttact
agtctctcggctattgctcaaagaaggccttccttttatggacgcatactgccagtttta
ctttctttggacccagcaaataccattatcaaagtgcaagttccaggtgcattccatgct
ttgaagagtgccattgatgcatgcctgaaatgtacacattcaagtgctgagccgtggcga
gctcgtctattggaagctcaaaatattataaaccagggagattcaatagctgcaaatgat
tcaaatgctggtaggagtgctggagacacgtccaacagggccgagtcgttgcctctgaca
gaaacaagcactgacaacagtaacaagcggagtctggctgatgacatgaataatattcta
gaagatgatggtcattccagtaaaagggtcaaacaatcacatgattctcaggaacatagt
gaagaggcaaacaagagaaatactgaagcagcctctgttgattcatcatccaatcaaccc
acccttgcaagaactgagaattctgaagctgtatatcaattaattggtatgtttgctgca
ttagctgcgcaaggcgacagagctgctggatcactacaaatcctgtcatccagtatcgct
gctgacttattagcagaggttgtaatggttaacatgcaacacctgccagtttctggtcct
gaagtagatcaacgacaacatccttcaactagccagtcctctgttgctcctagtcggaat
attctttcaggtcgctttcctatgttagaggctctgtggaagacaataagtgaaactgat
caagctgaagcacctccagctaaggatactgctctggtgacatctgctgctggtgagatc
ataccagttcttgccagttctcctgttccttctgcattaaaaacaccgaaggaggaggac
attagttcagcagttccactagatatagaaacagtagaggctaaagtgcccactgcagat
gccactggattatcgatggagattcaggaatcatcagaaacttcccatgcttctacagaa
cctcagggaacccaagaacattctggcagttttgttactcctttgccagctgacaattct
tcagttggtatcagtttggctcaatgttcagaaactcgcagtccaagctcctctactatt
gacggaagccagtcacagttttcatctttgaatgcccctacttcacagtatgttcttcca
aaattggttgtgactaatgtcgatctgaccgatgaggctaaagatctccttcaaaaagaa
gcatttctgcgtattcttgagagagataagcaagtagagtctggtggttcgaaagctcgt
cttccgttgctttctcacctgagtgttgagtttcctttggagttggacccgtgggagctt
ctcaaaaagcatgtactatctgactatgtaaataaggagggacacgagttgacactgggc
atcctgaacaggttatatcgtgaggcagaacaggatcaggacttcctttcatctagaact
gcaacatcagtttatgaatcatttgttctgacaatagctgaaaatcttcgtgatatgttt
ccggcttcagatagatcacttggcaaattgctttgtgagatgccatacctaccagaaggt
gtattaaaactgctagagggtttatgttctcctggaaataatgagaagcaggacaaggat
cttcagagtggtgacagggtaactcaaggtctaagtgctgtctggaaccttatcatgtta
agacctccaaaccgggacagatgtctggacattgctttgcagagttcaatcaatcgtata
gatgaggtccgcatgaaggcaatacgtttggtagcaaataaactatttccaatggcaagc
atttccaaaaggattgaagattttgcaaatgaaaaacttaattcagtcctggaagtgatt
ccagcagctgaatctgcatcagctgctgaaatgggcacacccgaggttcaccaggatggt
ggtttagaaaatgtatcctcggtagcagatgctctaactttgatgtcgctgtattttgct
ctgtgtaccaagaagcactcccttctccggcgtgtatttgaaatatatggcagtcttcca
caggctgccaaacaggcagttcacagacaagtacccattctgattcgcacgatacgttcc
tctcctgaacttcttggtatcatctcagatccaccagctgactgtcgggacctactcatg
caggttttacagactctcactgatgtagcagtgccctctcaagatctgatttcttccata
aagaacttatattcaaaaactaaggatactgagttccttttcccagtcatggctcatctg
ccaaaagatgagattctgtctgtgtttcccaatattgttaatcttccggtggataagttt
caagttgccctttctcgaatcctgcagggatcaccacaacatggccctattcttgaccca
tcagaaattttgattgcgattcatgtaatagatcctgaaaaagaaggaataccactgaaa
aaggtcatggatgcatgtgctgcctgctttgagcaaaggacaacattcactcagcaagtt
ttggcaaaagcactaaaccaactggttgaacagattcccctacctttgctgttcatgcga
actgttatgcaagcgataagtgcatttcctgccttggtggattttgtgatggagatcatg
tcacgccttgttagcaagcagatatggaaatatccgaagttatgggtaggattcctgaag
tgtgctatcctgacaaagcctcagtcctatggtgtgttactgcagttaccagctccacaa
ctcgaaaacgccctgaataagaaccctgtactgaaggcgcccttggtcgagcatgccagc
cagccaaacgtgcgatcgactctcccaaggtctagcttggtggttctgggcctcgctgaa
gatcaacagcagcagccagcacccgaggcgcagagcagccagaaccaggccgcggagacc
agcagctcggccgcagaggccacgacggaagtgacccaggaatcctccgccgccagttga
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