Triticum dicoccoides (wild emmer wheat): 119362742
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Entry
119362742 CDS
T07278
Name
(RefSeq) pre-mRNA-splicing factor SYF1-like
KO
K12867
pre-mRNA-splicing factor SYF1
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
119362742
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119362742
03041 Spliceosome [BR:
tdc03041
]
119362742
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
Other transport factors
119362742
Spliceosome [BR:
tdc03041
]
Complex B
Other components
Prp19-related factors
119362742
Complex C
119362742
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
HAT_Syf1_CNRKL1_C
HAT_Syf1_M
HAT_Syf1_CNRKL1_N
HAT_PRP39_N
HAT_PRP39_C
TPR_14
ARM_TT21
TPR_15
ARM_TT21_C
TPR_5
TPR_16
DUF4611
Motif
Other DBs
NCBI-GeneID:
119362742
NCBI-ProteinID:
XP_037483890
LinkDB
All DBs
Position
2B:158107889..158117628
Genome browser
AA seq
932 aa
AA seq
DB search
MPSAAAGPVEVAPPAKAAALPFAGISPDLYPTEDDLPYEEEILREPFKLKGWWRYLVARA
AAPFAKRAVIYERALKALPGSYKLWHAYLRERLDHVRPHPISHPAYASLNNTFERALATM
HKMPRVWVLYLTSLLDQRLLTRGRRNFDRALRALPVTQHDRIWPLYLRLASLPACPVETS
FRVFRRYLQFDPSHAEDFIEFLVSAERWQEAADRLASVLNDDGFRSVKGKTRHQLWLELC
DILTKHADEVAGLKVDAILRGGIRKFTDEVGKLWTSLADYYVRRTLYEKARDVFEEGVSS
VMTVQEFSVVFEAYTQFEQSMLAAKLEAAEEDGAAESDEGEKGGRKNKVEKLEKELAACW
LNDEDDTDLRLARFERLLDRRPELLSSVLLRQNPHNVEEWHRRVKLFDKDPAKQVATYVE
AVKTVDPMKAVGKPHTLWVAFAKMYEKHNRLDSAEDIFKKATQVNYKAVDHLATIWCEWA
EMELRNQHFDKAIELMRLATAEPSVEVKRRAAAEGDEPVQLKLHKSLKLWSIYVDLEESL
GSLETTRAVYERILDLRIATPQIILNYAFLLEENKYFEDAFKVYERGVKIFKYPHVKDIW
VTYLTKFVKRYQRSKLERARELFTEAVEKAPPHEKKALYLQYAKLEEDYGLAKRAMNVYD
EAVRAVPNTEKMSMYEIYIARAAELFGVPRTRQIYEQAIESGLPDKDVMVMCMKFAELER
NLGEIDRSRAIYIHASNYADPNSHPEFWKKWNDFEIQHGNEDTFREMLRIKRTVAASRSQ
THFILPEYLMQRDQRLNMDEAVDTLTRAGVPQDEMAALERQLASGPSPAPAAAAPSSSTT
PTNRMMNFVSAGVEARAESSTQQAAANNEDIELPDEESDEEDDVQIAERAVPEAVFGELG
KRAAESREESSSAQENNEQQLGALERIKRRRQ
NT seq
2799 nt
NT seq
+upstream
nt +downstream
nt
atgccgtcggccgccgcgggtccggtggaggtggcgccgccggcgaaggcggccgcgctc
ccgttcgccgggatctcgccggacctctacccgacggaggacgacctgccctacgaggag
gagatcctgcgggagcccttcaagctcaaggggtggtggcgctacctcgtcgcccgcgcc
gccgcgcccttcgccaagcgcgccgtcatctacgagcgcgcgctcaaggcgctccccggc
agctacaagctctggcacgcctacctccgcgagcgcctcgaccacgtgcgcccgcaccca
atctcccacccggcctacgcctccctcaacaacaccttcgagcgggcgctcgccaccatg
cacaagatgccgcgcgtctgggtcctctacctcacctcgctgctcgaccagcgcctgctc
acccgcggccgccgcaacttcgaccgcgccctccgcgcgctgcccgtcacgcagcacgac
cgcatctggccactctacctgcgcctcgcctcgctcccggcctgccccgtcgagacgtcc
ttccgcgtgttcaggcgctacctccagttcgacccctcccacgccgaggacttcatcgag
ttcctcgtctcggccgaacgctggcaggaggcagctgaccgcctggcctctgttctcaac
gacgacggcttccgctctgtcaaggggaagaccaggcaccagctctggctcgagctctgc
gacatcctcactaagcatgctgatgaggtcgcagggctcaaggtggatgccatactgcgg
ggcgggatacgcaagttcaccgacgaggttggcaagttgtggacctcgctcgctgattac
tatgtcaggaggaccctctatgagaaagcaagagacgtcttcgaagagggggtttcttca
gtgatgacagtgcaggagttcagtgtggtgtttgaggcttatacacaatttgagcagagt
atgcttgcggcaaagctggaggcagctgaagaggacggggctgcggagagtgatgagggt
gagaaagggggcaggaagaataaggtagagaagctagagaaggaacttgcagcgtgttgg
ttgaatgatgaagatgacactgatttgaggctggcaaggtttgagcggctattggatcgc
agaccagagctccttagcagtgtcctattgagacagaatccacataatgtggaggagtgg
cacaggagggtgaaactttttgacaaggatcccgcgaagcaagtagcgacatatgtcgag
gctgtgaaaactgtggacccaatgaaggcagttgggaagcctcatactctatgggtggca
tttgcaaagatgtatgagaaacataaccgcttagatagtgctgaagatatctttaaaaag
gccacacaagtgaactacaaagcagtggaccacttggctactatttggtgtgaatgggcc
gaaatggagctccgcaaccaacattttgacaaggcaattgagctgatgaggttagccaca
gcagagccctctgttgaggtgaagaggcgagctgccgccgagggtgacgagccggtccag
ctgaaattacataaatctctgaaattatggagtatctatgttgacctggaggagagcctt
gggtcgttggaaacaacccgtgctgtttatgagagaatattagatttaagaattgccact
cctcaaataattcttaattacgcatttcttcttgaggagaacaaatatttcgaagatgca
tttaaagtgtatgaaagaggtgtaaaaatattcaagtatccccatgttaaggatatttgg
gtgacctacctcacaaagtttgtaaagaggtaccagcgaagcaagttagagcgggcaaga
gagctgttcacggaagctgtcgaaaaggctccgccgcacgaaaagaaggccttatatttg
caatatgctaaactggaggaagactatggcctcgcaaaacgtgccatgaatgtatatgat
gaagctgtaagggctgttcccaacactgaaaagatgagtatgtatgaaatatacattgca
cgtgctgctgaacttttcggtgttccaaggactagacaaatatacgagcaagctatagaa
tctggtctcccagacaaagatgttatggtgatgtgcatgaagtttgcggaacttgaaaga
aatcttggagaaatcgaccgttcccgggctatttatatccacgcctccaattatgctgat
ccaaattctcatccagagttctggaaaaaatggaacgactttgagatccaacacggtaat
gaagatacattcagggagatgcttcgcatcaagcgtacagtggcggctagccgcagtcag
actcatttcatccttccggagtacctgatgcaaagggaccagaggctaaacatggacgag
gcggtcgacactctgacgcgtgccggtgtcccgcaggatgagatggcggccttagaaagg
cagctagcttctggaccatccccggcgccagcagcagcagctccgagcagcagcacgact
cccacaaacagaatgatgaactttgttagtgccggagtagaggcgcgggccgagagcagc
acgcaacaggctgctgctaacaacgaggacatcgagctgccggacgaagagagcgacgag
gaggacgatgtccagatcgcggagagggctgttcctgaagccgtgtttggcgagctcggc
aagagagccgcggagagcagagaggaaagctctagtgctcaagagaacaacgagcagcag
ctgggcgctctcgagagaattaagcgaaggcgtcaatag
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