Triticum dicoccoides (wild emmer wheat): 119363648
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Entry
119363648 CDS
T07278
Name
(RefSeq) regulator of nonsense transcripts 1 homolog
KO
K14326
regulator of nonsense transcripts 1 [EC:
5.6.2.5
5.6.2.3
]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03013
Nucleocytoplasmic transport
tdc03015
mRNA surveillance pathway
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09122 Translation
03013 Nucleocytoplasmic transport
119363648
03015 mRNA surveillance pathway
119363648
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119363648
Enzymes [BR:
tdc01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.3 DNA 5'-3' helicase
119363648
5.6.2.5 RNA 5'-3' helicase
119363648
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA surveillance and transport factors
Surveillance factors
Surveillance complex
119363648
mRNA cycle factors
Common to processing body (P body) and stress granule
119363648
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
UPF1_Zn_bind
AAA_12
AAA_11
UPF1_1B_dom
AAA_30
AAA_19
ResIII
SLFN-g3_helicase
DEAD
UvrD-helicase
NPHP3_N
Helicase_RecD
nSTAND3
ATPase
PhoH
SRP54
AAA_16
AAA_22
AAA_25
Ribosomal_S13_N
AAA_32
Hydin_ADK
AAA
Motif
Other DBs
NCBI-GeneID:
119363648
NCBI-ProteinID:
XP_037484912
LinkDB
All DBs
Position
2B:complement(336677596..336693309)
Genome browser
AA seq
1268 aa
AA seq
DB search
MATQPPSSAAAADLYETASQPDPSASAAGDAYTFLEFNTQGDDFEYPDFPELSQPARSAP
PPPAPVTSSASSSWPAPPLPPDALPDADLAPQDSTPPASSSSPSPRSSASKSRAAAAVAD
GLAAGVAALSFEEPPGAGTGDDGYDYGKGDFVEHACRYCGIHNPACVARCNVPSCRKWFC
NSRGNTSGSHIVNHLVRAKHKEVCLHKDSPLGETILECYNCGCRNVFLLGFISAKAENVV
VLLCREPCLNVNALKDMNWDLSQWTPLIDDRCFLSWLVKVPSEQEQLRARQISAQQINKV
EELWKTNPDASLEDLEKPGVDDEPQPVVLKYEDAYQYQNVFAPLIKLEADYDKMMKESQS
KDSVTVRWDIGLNKKRVAYFVFPKEDNELRLVPGDELRLRYSGGTSHPAWQSVGHVIKLT
AQEEVALELRASQGVPVELNNGFSVDFVWKSTSFDRMQGAMKTFAVDETSVSGYIYHHLL
GHEVEHQIIRNTLPRRFGAPGLPELNASQVLAVKSVLQKPVSLIQGPPGTGKTVTSAAIV
YHMAKQGQGQVLVCAPSNVAVDQLAEKISSTGLKVVRLCAKSREAVSSPVEHLTLHYQVR
HLDNSEKSEMHKLQQLKDEQGELSSSDEKKYKALKRATEREILQSADVICCTCVGAGDPR
LSNFRFRQVLIDESTQATEPECLIPLVLGVKQVVLVGDHCQLGPVIMCKKAARAGLAQSL
FERLVILGVKPFRLQVQYRMHPCLSEFPSNCFYEGTLQNGVTANERQSSGIDFPWPVPNR
PMFFYVQMGVEEISASGTSYLNRTEAANVEKIVTTFLRSGVVPSQIGVITPYEGQRAYIV
NYMSRNGSLRQQLYKEIEVASVDSFQGREKDYIILSCVRSNEHQGIGFLNDPRRLNVALT
RARYGIVVLGNPKVLSKQPLWNSLLTHYKEHECLVEGPLNNLKQSMVQFQKPKKIYNDRR
LYLGGGQGVMQGSAFGTVGSVDKRSGRGKGHPFVPFGPPNGAHKPGVHPSGYPLPRMPYP
PFPGSPHSQPYAIPTRGSLHGPIGAVPAAPQPVNRNFGAPRANTGGPIGGHLAAHQQNSQ
QAMGSVGPTFNFAGDPSSQPSGGGLMSQSGLMTQMPVQGLSQTFRDGFPVGGMSQDFFGD
DFKSQGSHVAYNIADFSTQASQGGYAVEYTQGPQSGYPGNYLNQSAHPGYPHMGVTNDIV
SQDHMAHGSHGMFTQAGYNDPSQDESSQMHYGMGASGHLQSQSMMNPMYSQSYAHYNTQP
QSLQPPPQ
NT seq
3807 nt
NT seq
+upstream
nt +downstream
nt
atggcgacgcagccgccttcctcggctgcggccgccgacctctacgagacggcctcgcag
cccgacccctccgcctccgccgccggggacgcatacaccttcctggagttcaacacgcag
ggcgacgacttcgagtaccccgacttcccggagctctcccagcccgcgcgatccgcgccg
ccgcccccggcccccgtcacctcctcagcctcttcttcctggccggctccgcccctgccg
cccgacgctttgccggacgccgatctcgcgccgcaggactcgaccccgccggcctcttca
tcctcgccgtcgccgcggtcgtcggcgtcgaagtcaagggcggcggcggcggtggcggac
gggctagccgcgggggttgcggccctcagcttcgaggagcctcctggcgccggaacgggg
gatgacgggtacgactatggcaagggcgacttcgtggagcacgcctgccggtactgcggg
atccacaaccctgcatgcgttgcgcgctgcaacgtgccatcctgccgcaagtggttttgt
aactcgcgagggaacacctctggctcccacattgttaaccacctggtcagagcaaaacat
aaggaagtctgccttcacaaggatagccctctgggagaaacgattcttgaatgctacaat
tgtggctgccggaatgtatttctgcttggttttatctccgcaaaggcagagaatgttgtt
gttcttctgtgtagagagccctgcttgaatgttaatgcgttgaaggatatgaattgggat
ctcagtcagtggacacctcttattgatgacaggtgtttcttatcatggcttgtcaaggtt
ccctcagaacaggagcagttgagagcacgccaaattagtgcccagcaaattaacaaagtg
gaagagctctggaaaacaaatcctgatgcctctcttgaagatcttgaaaaacctggtgta
gatgatgaaccccagccggtggttttgaagtatgaagatgcttaccagtatcaaaatgtt
tttgctccgctgataaagcttgaggctgattacgacaagatgatgaaagagtcacagagc
aaggacagtgtaactgtgaggtgggacattggactgaacaagaagcgtgttgcctatttt
gtctttccaaaggaagataatgaattgagacttgtccctggagatgagctacgtctgaga
tattctggtggtacttcacaccctgcatggcaatctgtggggcacgtgattaaactcact
gcacaagaggaggtagcacttgagcttcgtgctagtcagggagtgcctgttgaactgaac
aatgggtttagtgtggattttgtttggaagagtactagctttgataggatgcaaggggca
atgaagacttttgctgtagatgagacaagtgtcagtgggtacatatatcatcaccttttg
gggcatgaagttgagcatcagataatacgcaatacactaccgagacgcttcggtgcgcca
ggacttccagaattaaatgcttcccaggtcttggcagttaaaagtgttctccagaagccc
gttagtttgattcaaggtccacctggcactgggaaaactgttacatcagctgcaattgtg
taccacatggcaaaacaaggccaagggcaggtccttgtatgtgcaccaagtaatgttgct
gttgatcagttggcagagaagataagctcaacaggtctcaaggttgttagactttgtgcg
aaatctagagaagcagtttcttcacctgttgagcatcttacacttcattatcaggttcgg
catctcgataattccgagaagagcgaaatgcataagctacagcaactaaaagacgagcaa
ggagaattgtcgagcagtgatgagaaaaagtacaaggcactaaaacgagccactgaaaga
gagatattacaaagtgctgatgtgatttgctgcacctgtgttggtgctggagaccctcgt
ttgtcaaacttccgttttcgccaggttcttatcgatgagtctacacaggcgacagagcca
gaatgtcttattccattggttcttggtgttaagcaggttgttcttgttggagatcattgc
caactgggtccagtcatcatgtgcaaaaaggcagcgcgagcaggattagcacaatctctc
tttgagcgccttgttatccttggagtcaagccattcaggctacaggtccaatatagaatg
cacccttgtctttcagaatttccatccaactgtttttatgaaggcacactgcaaaatggg
gtaaccgcaaatgagagacagtcatctggaattgactttccttggcctgttccaaatcga
ccgatgttcttctatgtgcagatgggagtagaagagataagtgctagtgggacatcttac
ctcaataggactgaagctgcaaatgtagagaaaattgtaactacattcttaagaagtggt
gttgtgccaagccagatcggagttatcacaccttatgaagggcagagggcgtatatagta
aattatatgtcaaggaatggctctcttcgccaacagctttacaaggaaattgaggtggca
agtgtcgactccttccagggaagagagaaagattacattattctgtcttgtgttagaagc
aatgaacaccagggtatcggctttcttaatgatccacgcaggttaaatgttgcattaact
cgtgctaggtatggtatagtcgttcttgggaaccctaaagttctaagcaagcagcctctt
tggaatagtttgttgacacattacaaggagcatgagtgcttggtagaaggacctttgaac
aatttgaagcagagtatggtgcaatttcagaaaccaaaaaagatctacaatgatcgaaga
ctgtacctgggtggtggtcaaggtgttatgcagggatctgcctttggcactgtaggctca
gtagataagagaagtggtaggggaaaaggacacccatttgttccatttgggccaccaaat
ggggctcacaaacctggtgtgcacccatcaggctatcctttacctcgcatgccttatcct
ccatttcctgggtctccacattctcaaccctatgcaattccaacccggggatccctgcat
ggacccattggagctgttccggcggcgcctcaacctgttaataggaactttggggctcct
cgtgcaaataccggtggccctattggtggtcaccttgctgcccatcagcagaactctcag
caagctatgggaagtgtgggcccaacttttaactttgctggtgatccgagcagtcagcct
tctggtggaggcctgatgtcccaatctggactgatgacacagatgcctgtccaaggtctt
agtcaaacattccgtgacgggtttcctgttggtgggatgtctcaggacttctttggagat
gatttcaagagccaaggatctcacgtggcatacaacattgcagatttttctactcaggct
tctcaaggaggttatgctgttgaatatacacaagggccccaatctggatatcctgggaat
tatttgaaccaaagtgcacatccaggatacccccatatgggtgtaacaaatgacattgta
tctcaggatcatatggcccatggttcacatggaatgtttacgcaagcgggatacaacgac
ccatcacaagatgaatcttctcagatgcattatgggatgggtgcttctggccatcttcag
tcacagagcatgatgaatcctatgtactctcagtcatatgctcactataacactcaacct
cagtctcttcagcccccaccgcagtga
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