Triticum dicoccoides (wild emmer wheat): 119364448
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Entry
119364448 CDS
T07278
Name
(RefSeq) DNA repair protein RAD50-like
KO
K10866
DNA repair protein RAD50 [EC:3.6.-.-]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03440
Homologous recombination
tdc03450
Non-homologous end-joining
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09124 Replication and repair
03440 Homologous recombination
119364448
03450 Non-homologous end-joining
119364448
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tdc03032
]
119364448
03400 DNA repair and recombination proteins [BR:
tdc03400
]
119364448
DNA replication proteins [BR:
tdc03032
]
Eukaryotic type
DNA Replication Termination Factors
MRN complex
119364448
DNA repair and recombination proteins [BR:
tdc03400
]
Eukaryotic type
DSBR (double strand breaks repair)
HR (homologous recombination)
MRN(MRX) complex
119364448
BRCA1-C complex
119364448
NHEJ (non-homologous end-joining)
MRX complex
119364448
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
AAA_23
SMC_N
AAA_15
AAA_21
SbcC_Walker_B
Rad50_zn_hook
AAA_29
ABC_tran
AAA_13
Motif
Other DBs
NCBI-GeneID:
119364448
NCBI-ProteinID:
XP_037485820
LinkDB
All DBs
Position
2B:complement(496489491..496517787)
Genome browser
AA seq
1316 aa
AA seq
DB search
MSTVDKMLIKGIRSFGPESKNVITFFRPLTLIVGSNGAGKTTIIECLKLSCTGELPPNSR
SGHTFVHDPKVAGETETKGQIKLRFKTAAGKDVVCIRSFQLTQKASKMEFKAIESVLQTI
NPHTGEKVCLSYKCADMDREIPALMGISKAILDNVIFVHQDESNWPLQDPSTLKKKFDDI
FSATRYTKALEVIKKLQKDQAQEIKTFRLKLENLQTLKDQVYRLRDSIAQDQEKSDALKA
QMEDLKTNIQAVENKIRRTETSIMDLRRLQEQISTKATARSTYLTLQQQQHAALSEENED
TDEELREWQTTFEEKIALLDTKIGKLEREMNDEYTKISLLSETINDSTRQIGKLQAEADA
HVSVKHERDSAIRKIFNKHNLGPIPDAPFTNAIATNLTYRTKARLSSLEDDLQEKKKSSE
TQLEFLWGRYLKVNVRYSEVDGQIQSKKESKIGVLRRMKDKENERDAAEMELSKHNLARI
DERDRHLQIEVEKKTNALGERDYDLIISQKRPEIYALDHKIKTLHREKDNITTDADDRVK
LELKKDELEKCKKKLKKIYDEHKDKFRSVLKGRLPYEKDVKKEITRAFGFVDAEYNDLSS
KSLEAEQQSKLAQMKISAARSHLSKLQKDLDAKRNHLNSKLQPITKVSVDINTYPKILKD
AMDDRDKQTNTYNYAKGMRQMYEPFEKVARQQHKCPCCDRVFTPDEEDIFVKKQRTTSTS
TAERLNVLAIELSNAEDFFNRLDNFRVVYDEYVKLGKENIPLAEKDLEQLLADESEKAQI
FKDLVSALAQVKTDRDGVEVLLHPVDTINRHVQEIQELEPQVKDLEYKLDSRGQGVKSVE
EIQLELNSVQRARDTLISEVDDLRDQQKILSEDLSNAQMRWHALREEKLRASSVLLKFKK
AEEDLVLFAEEKEQLIIDQKHLEEALVPLSKERESLLQEHKALKERLDQEYDQLAERKRG
FQQEIDALGTLNTRIKGYLDAKKVEKLNELQERHTLSLSQLQKCEARKQDISVELDKSKQ
LLRSQDQLKRNIDDNLNYRKTKAEVDRLAHDIELLEENVLSIGSKSTIRADHKRHAQEKE
KLLSEYNRCEGTISVYQSNISKHKLELKQTQYKDIEKRYFNQLLQLKTTEMANKDLERYY
AALDKALMRFHTMKMEEINKIIKELWQQTYRGQDIDCISISSDSEGAGTRSYSYRVVMQN
GGAELEMRGRCSAGQKVLASLIIRLALAETFCLNCGILALDEPTTNLDGPNAESLAAALL
RIMESRKGQENFQLIVITHDERFAQLIGQRQLAEKYYRVSKDEQQHSKIESQEIFD
NT seq
3951 nt
NT seq
+upstream
nt +downstream
nt
atgagcacggtggacaagatgctgatcaagggaatccggagcttcggcccggagagcaag
aacgtcatcaccttcttcaggccgctcaccctcatcgtcggctccaacggagccggcaaa
accacgatcatcgagtgcctgaagctgtcctgcaccggcgagttgccccccaactcccgc
tccggccacaccttcgtccatgaccccaaggtggcaggtgaaaccgaaacgaaagggcag
attaagctgcggtttaagacggcagcaggaaaggatgtggtgtgcatccgatctttccag
cttacccagaaggcatcaaagatggagtttaaggcaatcgagagcgtcctccagaccata
aatccacacacgggcgagaaggtttgtctcagctacaaatgtgctgatatggatagggag
attccagccttaatgggtatttcgaaggctatattggataatgttatatttgtgcaccaa
gacgaatccaattggccgttacaggacccgtcaacacttaagaaaaagtttgacgacatc
ttttctgctacccgctataccaaagctctcgaagtcataaagaaacttcaaaaggaccaa
gcacaggaaatcaagacttttaggttaaagctggagaaccttcaaactcttaaagatcaa
gtatacaggcttcgggacagtattgcgcaagatcaagagaagtcagatgccttaaaagct
caaatggaggacctgaaaacaaacatccaggctgtcgaaaacaaaatccgtcgtaccgaa
acaagtatcatggacttgaggagacttcaggagcaaattagcaccaaggcaacagctaga
agtacatatttaacacttcagcagcaacagcatgctgccctttctgaggaaaatgaagat
accgatgaggaactgagggagtggcagacaacatttgaagaaaaaattgcgctactggat
acaaaaatcggtaaacttgaacgagagatgaatgatgaatatacaaaaatctctctgcta
tctgagaccatcaatgattcaacacgtcaaatagggaagctccaggcagaagctgatgct
cacgtgtcggtgaagcacgaacgagactcagccatcagaaagatattcaataaacataat
ctcgggccaattcctgatgctccttttactaatgctattgccacgaaccttacatacagg
actaaagcaagactatcgagtctcgaggacgatttgcaggaaaagaagaaatctagtgag
acacagttagagtttctttggggacgttatctcaaagtaaatgtccgctactctgaagtt
gatggccagatacaatctaagaaagaatctaagataggtgttttaaggcgcatgaaagat
aaagagaatgaacgagatgctgcagagatggagctttcaaagcataatctggcccgtatt
gatgaaagagatcggcatttgcaaattgaggttgagaagaagacaaatgccttgggagaa
agagactatgatttgattataagtcagaagcgcccagagatatatgcattggatcacaag
ataaaaacacttcaccgggagaaagataacataactactgatgctgatgacagagtaaaa
ttagaactgaagaaggatgaattggaaaagtgcaagaagaaacttaaaaagatatatgat
gaacataaggacaaatttagaagtgttcttaaggggaggcttccttatgagaaggatgtc
aagaaggagattactcgagcttttgggtttgtagacgcagaatacaatgatttgagctca
aaatctctggaagcagaacagcagtcgaaattggcacaaatgaaaatttctgctgctaga
agccacttgtcaaagctccaaaaagatttggacgcaaaaagaaaccatctgaactcgaaa
cttcaacccattactaaggtatctgttgacatcaacacttaccccaagattctgaaagat
gccatggacgacagagataaacaaacaaatacgtacaattatgcaaagggaatgcggcaa
atgtatgaaccttttgaaaaagtggcccgccagcagcacaagtgtccttgctgtgatcgt
gttttcacacctgatgaagaggacatctttgtgaagaagcaaaggactacaagcacaagt
accgcagagcgcctgaatgtactggcaatcgaattatcaaatgctgaagactttttcaat
cgattggataatttccgtgtggtttatgatgaatatgtgaaactggggaaagagaacata
cctttagcagagaaggatttggaacaacttttggcagatgaaagtgagaaggcgcagata
ttcaaagaccttgtgagtgctcttgctcaagttaaaacggacagggatggagtcgaagtc
ttgttacatccagttgatactatcaacaggcatgtgcaagaaatacaggagttagaacca
caagtcaaagatcttgaatataagcttgattctcgtggccaaggtgttaaatctgtcgag
gaaatccagttggagctgaactctgtgcagagggcaagggacacattgatcagtgaagta
gacgatctcagggatcagcaaaaaatacttagcgaggatctgtcaaatgctcagatgcgg
tggcatgctcttagggaagaaaaactaagagcctcaagtgtattgctgaagttcaaaaag
gctgaagaagatttggtactttttgctgaggaaaaagagcaactgatcatagatcagaag
catttagaagaggctcttgttccattgtcaaaagagagagaaagcttgttgcaagagcat
aaagctttgaaggaaaggcttgaccaggagtatgatcagctagctgaaagaaaaagggga
ttccagcaagaaatcgacgcacttggaacccttaacacacgcatcaaagggtacctggat
gcaaagaaagtagagaagcttaatgaactgcaggaaaggcataccctatccctgtctcag
ttacagaaatgtgaggcaagaaagcaagacatctcggttgagcttgacaagagtaaacag
ctattgcgcagccaagatcaattgaaaagaaacattgatgacaatctgaactacaggaaa
acaaaggctgaagtggatcgacttgctcatgatatcgagttacttgaagaaaatgtgctt
tccatcggcagcaagtccacaataagagctgatcataagcggcatgctcaagaaaaggag
aagcttctttcagagtataataggtgtgaaggaacaatttctgtttaccaaagtaatatt
tcaaagcacaaacttgagcttaaacagacacaatacaaggatattgagaaaagatatttt
aaccaacttctccaacttaagacaactgagatggcaaataaggacttggagcgatactat
gctgctttggataaggctcttatgcggttccataccatgaaaatggaagagataaataaa
ataataaaggaattgtggcagcagacatacagaggccaagatattgattgcataagcatc
agttctgactccgagggtgcaggcactcgatcatatagctatcgtgttgtcatgcaaaat
ggtggtgctgagctggaaatgcgagggcgatgcagtgctggccagaaggttcttgcttct
cttataatcagactggcactggcagagacattctgtctgaattgcggcatattagctctg
gatgagccaaccaccaatcttgacgggccgaatgcggagagcctagctgctgccctattg
agaataatggaaagcagaaaaggccaggagaacttccagctgattgtaatcacccatgat
gagcggtttgctcagcttattggtcagaggcagcttgccgagaagtactaccgagtttcc
aaggatgagcaacaacacagcaaaattgaatcccaggagatatttgactga
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integrated database retrieval system