Triticum dicoccoides (wild emmer wheat): 119366334
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Entry
119366334 CDS
T07278
Name
(RefSeq) vacuolar protein sorting-associated protein 41 homolog
KO
K20184
vacuolar protein sorting-associated protein 41
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc04148
Efferocytosis
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09140 Cellular Processes
09141 Transport and catabolism
04148 Efferocytosis
119366334
09180 Brite Hierarchies
09182 Protein families: genetic information processing
04131 Membrane trafficking [BR:
tdc04131
]
119366334
Membrane trafficking [BR:
tdc04131
]
Endosome - Lysosome transport
Tethering complex
Hops complex
119366334
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TPR_Vps41
Beta-prop_Vps41
zf-RING_Vps41
Clathrin
WD40_CDC20-Fz
WD40_WDHD1_1st
Beta-prop_EML_2
WD40_Prp19
zf_RING_Vps8_fungal
zf_RING_Vps8
zf-RING_2
WD40
WDR55
Beta-prop_TEP1_2nd
Beta-prop_HPS5
PEP5_VPS11_N
Motif
Other DBs
NCBI-GeneID:
119366334
NCBI-ProteinID:
XP_037487955
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Position
2B:complement(789151845..789159069)
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AA seq
946 aa
AA seq
DB search
MSSAARRASHPALANGDGEYGREDEEEEEEEGEEGDEPEEEPRLKYQRLGGSVPAILSTD
AAAAIAVTDRAVLLGTHDGTLHILDFQGNQSKEIKAHTATINDISFEDREYIGSCSDDGT
VVISNLFTDEKLKFEYHRPMKAIALDPQYSRSNNRFATGGLAGQVLVLTKKSWVSGYNKK
VLREGEGPIHSMKWRTDLLAWANDAGVKVHDMKTDRGIAFIEKPKGIPRPEVLLPHLVWQ
DDTVLVIGWGTSVKIAAIRTDSSQGLNGMQRSISAASSEKYVDIVGSFQTGYHISGIAPF
GDLLVMLAYIPEEDDGDKKNSTSVSSRQGTAQRPEIHLVSWKNDVLTTDALPIHGYEHYK
AKDYTLAHAPFSGSSNAGGQWAAGDEPLYYIVSPKDIVVAKPRDTEDHIAWLLQHGWHEK
ALAAVEAGQGRTELLDEVGTRYLDHLIIERKYAEAAQLCPKLLRGSPSAWERWVFHFAHL
RQLPVLIPYIPIENPQLSDTAYEVALVALTTNASFHGLLLTTLKSWPPTLYSASPVISAI
EPQLNSSSMTNSLKEALAELYVINSQYEKALSLFAELLKPEVFEFIEKHNLHDAIHDKVV
NLMLLDCKRAVHLLIQHRDIIPPYEVVEQLLHASKSCDKKYLLHQYLHALFEVDIHAGKD
YHDMQLELYADYEPRMLLPFLRTSQHYRLDKAYEIFAQKEFVKEQVFVLGRMGNAKEALS
TIINKLEDIQEAVEFVTEQHDDELWDELIRQCLQKPEMVGMLLEHTVGNLDPLYIVSLVP
DGLEIPKLRDRLVKIVTDYRTETSLRHGCNDILKADCVNLLVKYYHEARRGVCMASMDEE
AQGARVNEGSSRTGDRSSTLRNLEMKSRTRCGARCCLCFDPLSIQDMSFIVFYCCHAYHQ
SCLEGGLDSMKSNSNARDSDEGSEDDDGSPSGESRMRCVLCTTAAA
NT seq
2841 nt
NT seq
+upstream
nt +downstream
nt
atgtcgtccgccgcgcggcgcgccagccacccggcgctggcgaacggggacggggagtac
gggcgggaggacgaggaggaggaggaggaggagggggaggagggggacgagccggaggag
gagccgcggctcaagtaccagcggctgggcgggagcgtgccggcgatcctctccaccgac
gccgccgccgccatcgccgtcaccgaccgcgccgtcctgctcggcacccacgacggcacc
ctccacatcctcgacttccagggcaaccagtcaaaggaaattaaggctcacacagcaacc
attaatgacatcagttttgaagatcgtgaatatataggaagctgctcagatgatggcaca
gtagtaataagcaacctcttcactgacgagaaactcaagtttgagtaccatcgccccatg
aaagcaattgctttagaccctcagtattcccggagcaacaatagatttgctacaggtggc
ttagcaggtcaagtacttgtgctgacaaagaagagttgggtatcaggctataacaaaaag
gttctgcgtgagggtgaaggaccgatccattctatgaagtggaggacagatcttcttgcc
tgggctaacgatgcaggggtaaaagtgcatgatatgaaaacggacagaggaattgcattc
atagagaaaccaaaaggaattcctcggccagaagttttacttcctcacttggtctggcag
gacgacacagttttagttattgggtggggaacaagtgtcaagattgctgcaattcgaaca
gattcatcccaaggactcaatggaatgcaaaggagcatttccgcagcaagttctgagaag
tatgttgatattgtgggctctttccaaactggctaccacatatctggaattgctccattt
ggcgatcttttagttatgcttgcttatatccccgaagaggatgatggagataaaaaaaat
agtacttctgtttcttcacgccagggaacagcgcagcgtccagaaatacatcttgtatca
tggaaaaatgatgtgcttactactgatgctctgcccattcatggttatgagcactataag
gcaaaggattacactctcgctcatgcacctttctcaggaagtagcaatgcgggtggacag
tgggctgctggcgatgaaccgctgtattacatcgtgtctcctaaggatattgtggtagca
aagccaagagatactgaagaccatattgcgtggcttcttcaacatggttggcatgaaaag
gcattggctgcagttgaagcaggacaagggaggaccgagcttcttgacgaggtgggcaca
agataccttgatcacttgatcattgaaagaaaatatgctgaagcagcacaactctgtcca
aagttactgcgaggatctccttcagcatgggagaggtgggtctttcactttgctcatctc
cgccagcttcctgtgttgatcccttacatacccatagagaatccacagctgagtgatact
gcttatgaggttgctcttgtagctttaactaccaatgcgtcttttcacggacttctcttg
actacactaaaaagttggccacctacattatactctgcttcaccagtcatatctgctatt
gagccacagctcaattcctcatcgatgactaactcattaaaagaggctttagctgagttg
tacgtgatcaacagtcaatatgaaaaggccctttctctcttcgctgaactgctgaagcct
gaagtatttgagtttatcgagaagcacaatttgcatgatgccattcatgataaggttgtc
aatcttatgctattggattgtaaaagagcagtccatctattgatccaacatcgtgatatc
attcccccgtatgaagtcgtggagcaactgttgcatgcgagtaaaagttgcgacaaaaaa
tatctgttgcatcagtatttgcatgccttgtttgaggtagacatacatgctggaaaagat
taccatgatatgcagctggagctttatgcggattatgagccaaggatgttactgcccttc
cttcgtaccagccagcattacaggcttgacaaggcatatgaaatatttgcacaaaaagaa
tttgtcaaggagcaagtttttgttcttggtcgtatgggaaatgccaaggaagcactttct
acaattataaacaaactggaagatatacaggaggccgttgaatttgttacggagcaacat
gatgatgaattatgggacgaactgataagacagtgcctccaaaagcctgaaatggttggg
atgctgttggaacatactgtcggcaatcttgaccctctgtacattgtcagtttggttcca
gatgggctagaaatacccaaattgcgggatcgccttgtgaaaattgtgacagactatcga
acagaaacttcactgagacatggatgcaacgatatactaaaggccgattgcgttaatctt
ttggtcaaatactaccatgaggctcggcgtggggtctgcatggcaagcatggacgaggag
gcacaaggagccagagtcaatgaaggatcttcgcgaacaggcgacagatcatcgacttta
cgcaatctagagatgaaatccagaacgaggtgtggcgctagatgctgcctgtgcttcgac
cctttgtccatccaggacatgtcatttatcgtgttctattgctgccatgcgtatcaccag
tcttgcctcgaaggcgggctggactcgatgaaatcaaacagtaatgctcgggatagcgac
gaaggctcggaggacgacgacggttccccctcgggcgagtccagaatgcggtgtgtgctg
tgcaccacagccgccgcataa
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