Triticum dicoccoides (wild emmer wheat): 119367112
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Entry
119367112 CDS
T07278
Name
(RefSeq) 5'-3' exoribonuclease 3-like
KO
K12619
5'-3' exoribonuclease 2 [EC:3.1.13.-]
Organism
tdc
Triticum dicoccoides (wild emmer wheat)
Pathway
tdc03008
Ribosome biogenesis in eukaryotes
tdc03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdc00001
]
09120 Genetic Information Processing
09122 Translation
03008 Ribosome biogenesis in eukaryotes
119367112
09123 Folding, sorting and degradation
03018 RNA degradation
119367112
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdc03021
]
119367112
03019 Messenger RNA biogenesis [BR:
tdc03019
]
119367112
03009 Ribosome biogenesis [BR:
tdc03009
]
119367112
03016 Transfer RNA biogenesis [BR:
tdc03016
]
119367112
Transcription machinery [BR:
tdc03021
]
Eukaryotic type
RNA polymerase II system
Other transcription-related factors
Transcription termination factor
119367112
Messenger RNA biogenesis [BR:
tdc03019
]
Eukaryotic type
mRNA degradation factors
5'-3' decay
5' exonucleases
119367112
Ribosome biogenesis [BR:
tdc03009
]
Eukaryotic type
Pre-60S particles
RNases
119367112
Transfer RNA biogenesis [BR:
tdc03016
]
Eukaryotic type
tRNA degradation factors
Rapid tRNA decay (RTD) pathway factors
119367112
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
XRN_M
XRN_N
zf-CCHC
Motif
Other DBs
NCBI-GeneID:
119367112
NCBI-ProteinID:
XP_037488621
LinkDB
All DBs
Position
2B:complement(59236603..59243494)
Genome browser
AA seq
1063 aa
AA seq
DB search
MGVPAFYRWLAEKYPMVVVDVVEEEAVEVEGVKAPIDTSKPNPNGLEFDNLYLDMNGIIH
PCFHPDDRPSPTTFAEVFQCMFDYIDRLFVMVRPRKLLYMAIDGVAPRAKMNQQRSRRFR
AAKDAADAAEEEEKLRQEFEREGRKLPPKQQSQTCDSNVITPGTEFMAVLSVALQYYIHL
RLNYDLGWKKIKVILSDANVPGEGEHKIMSYIRGNRNLCNELNANTRHCLYGLDADLIML
ALATHEVHFSILREVVFTPGQQDKCFLCGQVGHLAAKCEGKAKRKAGEFDKKGDEIEPKK
PYQFLNIWTLREYLEYEFRMPNPPFKIDLERIIDDFIFMCFFVGNDFLPHMPTLEIREGA
INLLIAVYKKEFPNMGGYLTDTCTPDVNRVEHFIQAVGSYEDKIFQKRARLHQRQAERIK
RDKAQAKRGDDLDPHVSGDLIVPVARFQGSRLASGAVASPYEHNGLHNDSTEKGGRAKKA
RVSSSDSSLSAAVVEAEISVEAQARENKEELKSMLKVALRDKSDLFNSENPEEDKIKLGE
PGWRERYYEDKFGARTPEQIEEIRRDVVLKYTEGLCWVMHYYYEGVCSWQWFYPYHYAPF
ASDLKGLGQLNISFELGSLGSPFKPFDQLMGVFPAASSHALPLRYRQLMTDPSSPIIDFY
PIDFEVDMNGKRFSWQGIAKLPFIDEARLLSEIEKVEHTLTPEEARRNSTMYNMLFVNSL
HPIAPYIYSLSSKFGHLPDYERNEIKEPLKPSASGGMSGYISLCGGDPCPPVFRSPVDGL
DDIMDNQVVCSIYKLPDPHKHIARPLAGVIMPKKIVEAGDLKPPPVLWHEDNGRRPHDDN
RRHCDNSSRQNPAGSIQQGRQLGEAAHRLVANSLDIRGGGHYPPARPYQTIMNGLHYPNG
MPPWMEQPAGRPGWHVPSDNLPYGQVLAYAPPPGHQYTRDNRGRHQPYARDSHSDSRGAG
RHPYRYHQNGSSNAYFSHPAPSSSDFGRYGQPPVHAGGYQPAPYAGAQRWQQQQQQQPRS
SYSGGGALPARPNSRPQQSQNSYGSLDRTSNRRPPGQGFPLWF
NT seq
3192 nt
NT seq
+upstream
nt +downstream
nt
atgggcgtcccggcgttctaccggtggctggcggagaagtacccgatggtggtggtggac
gtggtggaggaggaggccgtggaggtggagggcgtgaaggcgcccatcgacacgtccaaa
cccaaccccaacggcctcgagttcgacaacctctacctggacatgaacgggatcatacac
ccctgcttccaccccgacgacaggccctcgccaacgacatttgctgaggtcttccagtgc
atgttcgattacatagacaggctctttgtcatggttcgccctcgcaagcttctctacatg
gccattgatggtgtggctcctcgtgctaagatgaaccaacagcgctctagacgattcaga
gctgcaaaagatgcggctgatgcggctgaagaagaagaaaaactgcgtcaagagtttgag
agggaaggaagaaagcttcctccaaaacagcaatcacaaacctgtgattccaatgttatt
actcccgggacagagttcatggctgttctatcagttgctttgcagtactacatccatctc
aggttgaattatgatcttggatggaaaaaaattaaagttattctttctgatgccaatgtt
cctggtgaaggggaacacaaaatcatgtcctacattcgtggcaataggaacctctgtaat
gaacttaacgcaaatacccgacattgcctgtatggcctggatgcagatctaatcatgtta
gctctagcaacacacgaagtgcacttctccatactgagagaggtggtgtttacacctgga
cagcaggacaaatgcttcctgtgcggtcaagttggacatctagcagcaaagtgtgaagga
aaggcaaaacggaaagctggggagtttgataagaagggtgatgaaatagaaccaaagaaa
ccttaccagttcttgaatatatggaccctacgagagtacctagaatacgagttcagaatg
ccaaatccacctttcaagattgatcttgaacgcatcattgatgatttcatcttcatgtgc
ttttttgttggcaatgattttcttccacatatgccgacactagagattcgtgagggagct
attaatttgcttattgctgtatacaagaaggaatttcctaatatgggtggctatttaacc
gacacttgcacgccggatgtgaatagagttgaacacttcattcaagcagttggttcatac
gaggataaaatatttcagaaaagggctcgtttgcaccagcgtcaagctgaaagaataaaa
cgtgataaagcccaagcaaagcgaggcgatgatctggatccccatgtcagtggtgatctt
attgtacctgttgcacgtttccaagggtctcgccttgcctctggggctgtggcttcacca
tatgaacataatggacttcataatgatagcacggaaaagggcggtcgagctaagaaagca
cgtgtatcatcttcagattccagcctttctgctgctgttgttgaagctgaaattagcgtc
gaagcacaggcacgtgaaaacaaagaagaactgaagtcaatgcttaaagtcgcacttcgt
gataaatcagatctttttaattctgaaaatccagaggaggacaagataaagcttggagag
ccaggatggagggaaaggtattatgaagacaagtttggggcaagaacacctgagcaaatt
gaagaaatacgtagagatgttgttctcaaatatactgaaggtctgtgttgggtaatgcac
tactattatgaaggtgtctgctcatggcaatggttttacccttatcactatgcccctttt
gcttcggatttaaaaggtttaggccagcttaatatatcttttgaacttgggtcacttggg
tcaccattcaaacctttcgatcagcttatgggagtattcccagcggcgagctcacatgca
ctccctctacggtatcggcagttgatgactgatccaagttcgcccataattgatttttat
ccgattgattttgaagtggatatgaatggaaagagattttcttggcaggggatagccaaa
ctgcccttcattgatgaagctaggttgctgtctgagattgaaaaagtcgaacatactttg
acgcctgaagaagcaagacgaaacagtacaatgtacaacatgctttttgtgaatagcttg
cacccaattgcgccttatatctactctctcagcagcaaattcggacacctgcccgattat
gagcgaaatgaaattaaagagccactgaagccttctgccagcggaggaatgagtggttac
atctcactttgtggcggggatccatgtccgcctgtcttcagatctcctgtggatggactg
gatgacattatggacaatcaagtggtatgctcaatttacaagcttccggatcctcataag
cacatagcacgcccacttgctggtgttatcatgcccaagaagattgttgaagctggtgat
ctgaaaccaccgcctgtgctgtggcatgaagacaatggcaggaggcctcatgatgataac
aggaggcattgtgataacagcagcaggcaaaaccctgcaggatcgatacagcagggccgc
caactaggggaggctgcacaccgactagttgcaaacagcttggatattcgcggcggcggg
cattaccccccagctaggccatatcaaactatcatgaatggtctgcattatccaaatgga
atgccaccatggatggagcagcctgctggacgtcctggttggcatgttcctagtgataat
ctaccctatggtcaggtactggcatatgcaccgccaccaggtcatcagtatacaagagat
aatcgcggaaggcatcaaccatacgcaagagacagccacagcgattcaagaggagcgggc
cgacatccatatcgataccatcagaatggtagcagcaacgcatatttctcacatcctgct
ccttcatcatcggattttggacgatacgggcaaccccccgtgcatgctgggggctaccag
cctgcaccgtatgcaggagcccaacggtggcagcagcagcagcaacaacaacctcgtagt
tcctattctggaggcggggcgcttcctgcaagacctaattcacgaccgcagcagtcacag
aactcctacggcagcttagataggacttcaaacaggagaccaccaggccaggggtttcct
ctttggttctag
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