Treponema denticola: TDE_1208
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Entry
TDE_1208 CDS
T00157
Symbol
topA
Name
(GenBank) DNA topoisomerase I
KO
K03168
DNA topoisomerase I [EC:
5.6.2.1
]
Organism
tde
Treponema denticola
Brite
KEGG Orthology (KO) [BR:
tde00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03032 DNA replication proteins [BR:
tde03032
]
TDE_1208 (topA)
03400 DNA repair and recombination proteins [BR:
tde03400
]
TDE_1208 (topA)
Enzymes [BR:
tde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.1 DNA topoisomerase
TDE_1208 (topA)
DNA replication proteins [BR:
tde03032
]
Prokaryotic type
DNA Topoisomerases
TDE_1208 (topA)
DNA repair and recombination proteins [BR:
tde03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHIIR (short-homology-independent illegitimate recombination)
Facilitator
TDE_1208 (topA)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Topoisom_bac
Zn_ribbon_Top1
Toprim
Toprim_4
Toprim_2
Motif
Other DBs
NCBI-ProteinID:
AAS11726
UniProt:
Q73NE5
LinkDB
All DBs
Position
1240327..1242492
Genome browser
AA seq
721 aa
AA seq
DB search
MENTMNETKKTKRTAKKTKQHCLVIVESPAKAKTIEKYLGGDYIVRASMGHLIDLPKSRL
AIDIEHNFTPEYITVRGRAKILKELKKEAKKSSSVFLASDNDREGEAIAFHLHEALLPEC
SSPIKRIVFNEITPNAIQEAVKNPMDIDMGKVNAQKSRRVLDRLVGYNLSPLLWQKVKNG
LSAGRVQSVALRLICEREEEVENFIPDEYWTLDGDFKYNKTSFEAQLVKYKDNKPELKNQ
KEVDAIIKELKSLPAVVDDIKITEKSIKPRPPFTTSTLQQVAANRIGFTSKKTMQVAQQL
YEGVAVGSTRVGLITYMRTDSIRISDTAIEAVRKWINENHPKELPDGPNVYAAGKKAQDA
HEAIRPTYIEYTPSYLKEFLTRDQLRLYSLIWERFVSSQMKNAKTKTSSYEIKVGDAVFR
AASTKITEKGFYTVTKTLISKDEKGTSLPSMKVGDEISIESLRPEQHFTQGPARYTDASI
VKMLEEKGIGRPSTYAPIISVLLERYYVTRSNKQLVPTQLGRIINNLLVKNFSEIIDVNF
TAGMENRLDEVAENKIEWPKLMESFYGSFKEKVDTALENVESIKGSLDEVTDIVCEKCGN
KMVKKLGRFGVFLACSAFPECKNTKSIPLAKCPREGCGGDIIARKSKKRGKEFYGCTHFP
ECDFISHFKPINASCPKCGWFMVEKYDKKNGNYKACINPNCDYLHSVVEGVEDVEVDRSN
E
NT seq
2166 nt
NT seq
+upstream
nt +downstream
nt
atggaaaacacgatgaatgaaacaaaaaaaactaaacgtactgcaaaaaaaacaaaacag
cattgcttggttatagtcgagtcccccgcaaaggctaagacaatcgaaaaatatttagga
ggcgattatatcgtaagagcttctatggggcatttgatagatttgcctaaatcaagattg
gcaatcgatatagaacataattttactcccgaatatataacggttagagggcgagctaaa
attttaaaagaactaaaaaaggaagcaaaaaaatcttcgagcgtttttcttgcaagtgat
aatgatagagaaggggaggctattgcctttcatttacatgaagccttgcttccggaatgt
tcttctccgataaaaagaatagtttttaacgaaattactcccaatgcaatccaagaagcc
gtaaaaaatcccatggatatagacatgggaaaggtaaatgctcaaaaatccagaagagtt
ttggatagattggtcggttataacctatctccgcttctttggcaaaaagtaaaaaacgga
ttgtcggcaggtcgtgttcaatccgttgcattgcgtttaatctgtgaacgggaagaagag
gttgaaaattttattcctgatgagtattggactcttgacggagattttaaatacaataaa
acttcttttgaagctcaacttgtaaaatacaaggataataagcctgaattaaaaaatcaa
aaagaggttgatgcaatcatcaaggagttgaagtctttacctgctgttgtagatgatatt
aagataacggaaaaaagtataaagcctcgccctccgtttacaacttctacattgcaacag
gttgccgcaaacagaataggctttacatcgaaaaagacaatgcaggtagcccagcagctg
tatgaaggtgttgctgtcggttctaccagagtcggtttgattacctatatgcgtaccgat
tcgataagaatttccgatacggcaatagaggctgtccgtaaatggattaatgaaaatcat
cctaaagaattgcctgatgggccgaatgtatacgcagcaggaaaaaaagcacaggatgca
cacgaggcaattcgtcctacatacattgagtatactccttcttatttaaaagaattctta
acccgtgatcagttaagactttattctttgatttgggaacgttttgtttcaagtcaaatg
aaaaatgcaaagacaaaaacatcgagttatgaaataaaggtgggggatgccgtttttcgt
gcagcttctacaaagataaccgaaaaaggtttttacacggttacaaaaacattaatttca
aaagatgaaaaaggaacttctcttccgtctatgaaggtgggagatgaaataagtattgaa
agtttaagacctgaacagcattttactcaaggccctgcccgttatacggatgcaagtatc
gtaaaaatgcttgaagaaaaaggaatcggaagaccttcaacctatgcgcctattatttcc
gttttacttgaacgctattatgtaacaagatctaataaacagcttgttccgactcagctg
ggaagaattatcaacaatcttttagtcaaaaatttttccgaaataatagatgtaaacttt
actgccggaatggaaaaccgcttggacgaagtagctgaaaataaaatagaatggcctaaa
ttgatggaaagtttttacggttcatttaaagaaaaagtagataccgctttggaaaatgta
gaaagcattaaaggttcgttggatgaagttacggatatagtctgcgaaaaatgcggaaac
aaaatggtaaaaaaacttggccgcttcggagtgtttttggcttgcagtgctttccctgaa
tgtaaaaatacaaaatcgattcctttggcaaaatgtccgcgtgaaggctgcggaggagat
ataatcgcacgtaaatccaaaaagagaggaaaagaattttacggatgtactcattttccc
gaatgtgattttatttcacactttaaacctatcaatgcttcttgcccgaaatgcggctgg
tttatggtagaaaagtatgataagaaaaacggaaactataaggcttgtattaatcctaat
tgcgattatttacacagtgtagttgaaggtgtagaagatgtggaggtggacagaagcaat
gaatga
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