Treponema denticola: TDE_2109
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Entry
TDE_2109 CDS
T00157
Name
(GenBank) ATP-dependent RNA helicase, DEAD/DEAH box family
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tde
Treponema denticola
Pathway
tde03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tde00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TDE_2109
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tde03019
]
TDE_2109
03009 Ribosome biogenesis [BR:
tde03009
]
TDE_2109
Enzymes [BR:
tde01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
TDE_2109
Messenger RNA biogenesis [BR:
tde03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
TDE_2109
Ribosome biogenesis [BR:
tde03009
]
Prokaryotic type
rRNA helicases
TDE_2109
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
DbpA
Cas3-like_C_2
CMS1
Motif
Other DBs
NCBI-ProteinID:
AAS12629
UniProt:
Q73KV8
LinkDB
All DBs
Position
complement(2133665..2135377)
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AA seq
570 aa
AA seq
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MLITFKELGLDDIVLQAVEAKGFEEPTPIQVLAIPRLLSGEANVIAKARTGTGKTAAFGL
PLVQELRSNTGKVRALILVPTRELAVQVAGELESFRIEEYPRIATVYGGAAIGPQLRSLK
TGVEIVVGTPGRIMDHLERGSLKIEDIEYFILDEADEMLNMGFIEDIENIFSKANPEARV
LMFSATMPKQILSIASDFMGDYEIVEEEPQEERASLTEQFFWVVREGDKTEALVRLIDTS
PNFYGLVFCQTKIDADDVAKELDERHYEAAALHGDIPQSQREKILERFRSKKTRILVATD
VAARGIDIEGISHVVNYAIPYDGPTYTHRIGRTGRAGAAGVAVSFVRPNEVKRIEYLRKH
ARGELKEGKIPSIEQVIEIKRTRILKETAAQIEKRISEEKPEQGFAAFANKLTEYGDAQT
VLSFILQMQYGSFLSPAHYKTIKPVRSEGKARKSDDDSLRLYIGVGRKDGITKRKLAEML
SRLLSIPERLVDDIEVMDKFSLATMPKNAANDALRLCKKKRGLPHMHIDVKSEAPTNYGS
IGKGKRGQKRKNGTQRKKEGLSSASKYKRK
NT seq
1713 nt
NT seq
+upstream
nt +downstream
nt
atgttaattacttttaaagaattgggacttgacgatatagtcctgcaagcagttgaagcc
aagggttttgaagaacctactcctattcaggttttggctattccccgccttctttcagga
gaagcaaatgttatcgctaaggctcggacaggaacgggaaagacggcagccttcggcctt
ccccttgtgcaagagctgcgttcaaataccggaaaggtgagagcccttattttggttcct
accagagagctggccgttcaagttgccggcgaacttgaatcttttagaatagaagaatat
ccccgtatcgcaaccgtttacggaggagcggcgataggccctcaacttagaagcctaaaa
acaggtgtcgaaatcgttgtaggaactcccggccgcataatggatcatcttgagcggggc
tccctaaaaatcgaagatatagaatattttattttggatgaagccgatgagatgcttaac
atgggctttatcgaagacatagaaaatatcttttcaaaggcaaatcctgaagcccgtgtt
ttaatgttttcggcgacgatgccaaagcagatactgagcatagcttcagactttatgggc
gactatgaaattgtcgaagaagaacctcaagaagaaagagcttctttaacggaacaattt
ttttgggttgtaagggaaggggataaaaccgaagcccttgtccgtcttatagatacgagc
cctaacttttacggcctcgtattttgccaaacaaaaatcgatgccgatgatgttgcaaag
gaacttgacgaaaggcactacgaagctgccgccctccacggggatattcctcaaagccaa
agggaaaaaatattggaacgctttagatcaaaaaagacccgcattcttgttgcaaccgat
gttgccgcaaggggtatagacatcgagggaatttcccatgttgtaaactatgcaattcct
tatgacgggccgacctatacccaccgtataggaagaacgggcagggcaggagcggcaggg
gttgcagtcagctttgtacgccctaatgaggtaaaaagaatcgagtacctgcgcaaacat
gcccgcggagaattaaaagaaggcaaaattccttcaatcgaacaagtcatcgaaatcaag
cgtacccgtatcttaaaagaaacggctgcccaaatcgaaaaacgcattagcgaagaaaaa
cccgaacagggctttgcagcctttgcaaataaactcacggaatacggagatgctcaaacc
gttctctcctttattcttcaaatgcagtacggctcgtttttatcgcctgctcattataaa
acaatcaagcctgtgcgttccgaagggaaggcgcgaaaatctgatgacgattctttgcgt
ctttatataggtgtgggccgaaaagacggcatcacaaagcgaaaacttgccgaaatgcta
agccggcttctttcaatccccgaacggcttgtagatgatatagaggttatggataagttt
tcccttgctactatgcctaaaaatgctgcaaatgatgctctgcgcctatgtaaaaagaaa
aggggcttgcctcatatgcatattgatgtaaaaagtgaggctccgactaattacggttct
atcggtaagggaaaaagaggacaaaaacggaaaaacggaacacaaagaaaaaaagaaggt
ttaagctctgcttcaaagtataagcgtaaatag
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