Treponema denticola: TDE_2404
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Entry
TDE_2404 CDS
T00157
Name
(GenBank) RNA polymerase sigma-54 factor, putative
KO
K03092
RNA polymerase sigma-54 factor
Organism
tde
Treponema denticola
Pathway
tde02020
Two-component system
tde02040
Flagellar assembly
Brite
KEGG Orthology (KO) [BR:
tde00001
]
09130 Environmental Information Processing
09132 Signal transduction
02020 Two-component system
TDE_2404
09140 Cellular Processes
09142 Cell motility
02040 Flagellar assembly
TDE_2404
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tde03021
]
TDE_2404
Transcription machinery [BR:
tde03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Sigma factors
TDE_2404
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Sigma54_DBD
Sigma54_CBD
Sigma54_AID
LacI
HTH_Crp_2
HTH_24
MarR
HTH_7
TPM_phosphatase
HTH_23
HTH_21
Arg_repressor
HTH_3
Motif
Other DBs
NCBI-ProteinID:
AAS12922
UniProt:
Q73JL4
LinkDB
All DBs
Position
complement(2429403..2430794)
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AA seq
463 aa
AA seq
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MLLKQRQQQILSQKMVMNQQMLNAVAMLNLSSEELQEEVIKEVKRNPALVFKTSSRVSAA
SAEEGDKHQSFLESIEDDSRKTLQAHLIEQAGESITDEYVLDAAMLIIQNLDQNGFYWVP
LEELFAGLLAEKKINHAEIKKALNIVRRFEPIGCACSGFKESLIVQAGILCESPKTHEIL
DIYKTIYSLCVKIIKEHYEVLVFVSDLKLFIKKLAQKKIDIDLETAEELAGLIDALNPKP
GLAYASKGDGEKFITPIAEIKREGNEIKIIINDEEVPALEISPEYEKIKNSGSKEEKKEA
SEFLNKAALFMNVLAYRNQTILKVLTALVNFQEAFFLGRPCKPSSEGESDKMQAGYLKPL
KQIDIAEIVGLSPSTVSRVSNQKYIRCEWGLFEIKDLFSPEVSGGLSKDFVEKAIQEIIE
SDTEKKTDTRISQILKERGIDIAVRTVNKYRKEMGLPSSYHRN
NT seq
1392 nt
NT seq
+upstream
nt +downstream
nt
atgttattaaagcaaaggcagcagcagattttatctcaaaaaatggtgatgaaccagcaa
atgctgaatgctgttgccatgcttaatttatcgagcgaagaacttcaggaagaggtaata
aaagaagtaaagcggaatccggcccttgtttttaaaacatcttcccgagtgagtgccgcc
tccgctgaagagggggataagcatcaaagttttttggagagcatcgaagatgattcccgc
aaaacccttcaagctcatctgattgaacaagcaggagaatcgattacggacgagtatgtc
ctagatgcggcaatgctcataattcaaaatttggatcaaaacggtttttattgggttcct
cttgaagaactctttgcaggcctgcttgccgaaaaaaagataaaccatgcggaaataaaa
aaagcccttaatattgtcaggcggtttgaaccgataggctgtgcctgttccggttttaaa
gaatctcttattgtgcaggcgggaattctttgcgagtcgcccaaaacgcatgaaatcctt
gatatttataaaaccatatattctctttgcgtaaagataataaaagaacactacgaagtt
cttgtctttgtttccgatttaaaactttttataaaaaaacttgctcaaaaaaaaatcgat
atagatttggaaacggcggaagaacttgcaggattgatagatgccttaaaccctaagccg
gggcttgcctatgcaagcaaaggagacggcgaaaaatttattacgccgattgccgagata
aaacgggaagggaacgagattaagattataataaatgatgaagaagttcctgccttggag
atttcgcccgaatatgaaaaaataaaaaattccggttcaaaagaagaaaaaaaagaggct
tcggagtttttaaacaaggcagctctttttatgaatgtgcttgcctaccgcaatcagact
atattaaaagttttaactgcccttgtaaattttcaagaggccttttttttaggccgcccc
tgcaaaccgtcctctgaaggggagagtgacaaaatgcaggcaggctatttaaagccctta
aaacaaatcgatattgcagaaattgtgggcttaagcccttctaccgtttcaagagtttca
aaccaaaagtacataagatgcgagtggggtctctttgaaattaaagacctgttttcgccg
gaagtaagcggcggattatcaaaagactttgtagaaaaagccatacaagaaatcatcgaa
tcggataccgaaaaaaaaaccgacacccgtatttctcaaatcttaaaagaacgcggaatc
gatatcgccgtaagaactgtaaataagtaccgcaaagaaatgggccttccttcttcttat
catcgtaattga
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