Tenacibaculum dicentrarchi: AUW17_00095
Help
Entry
AUW17_00095 CDS
T04208
Name
(GenBank) transcription-repair coupling factor
KO
K03723
transcription-repair coupling factor (superfamily II helicase) [EC:
5.6.2.4
]
Organism
tdi
Tenacibaculum dicentrarchi
Pathway
tdi03420
Nucleotide excision repair
Brite
KEGG Orthology (KO) [BR:
tdi00001
]
09120 Genetic Information Processing
09124 Replication and repair
03420 Nucleotide excision repair
AUW17_00095
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tdi03400
]
AUW17_00095
Enzymes [BR:
tdi01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
AUW17_00095
DNA repair and recombination proteins [BR:
tdi03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
TRCF (transcription-repair coupling factor)
AUW17_00095
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
TRCF
UvrB_inter
DEAD
Helicase_C
CarD_TRCF_RID
ResIII
Cas3-like_C_2
RecG_dom3_C
TerB_C
Motif
Other DBs
NCBI-ProteinID:
ALU73792
LinkDB
All DBs
Position
25009..28341
Genome browser
AA seq
1110 aa
AA seq
DB search
MSKQLIVNHYQQSDTVKQIVKELQQEQNHFQISNLVGSSLSFVISETFKKAEKPYLLIFN
DKEEAAYYLNDLEQLLGDKNVLFYPGSYRRPYQIEETDNANVLLRSEVLNRINSRRKPAI
IVTYPTALFEKVVTKKELDKNTLKITVGENISPDFVNEVLFEYQFNRVDFVTEPGDFSVR
GGIIDVFSFSNDEPYRMEFFGDEVESIRTFDVETQLSKEKQQKVSIMPNVENKGLQENRE
SFLKYISAKTAIFVKDIATITTNLDTFFKKATASFDELSTEIKHSKPSELFCDAALIQEE
LQKFTRVNMGKAVIKNITNIVFETHPQPSFNKKFDLLIQNFNEFSAKGFTNYIFCSNDKQ
AQRFHDIFDDNDTEVSYETIVFPLYQGFVDIQNKIVCYTDHQIFERYYKFRLKNGYEKKQ
SITLQELTRLEIGDYVTHIDHGIGKFGGLQKIDVEGKKQEAIKLIYGDRDILYVSIHSLH
KISKFNGKDGKPPKIYKLGSGAWKKVKQKTKARVKHIAFNLIQLYAKRKLQKGYAFAPDT
HMQHELEASFIYEDTPDQFTSTQDVKTDMEKPQPMDRLVCGDVGFGKTEVAIRAAFKAVD
NGKQVAILVPTTILAFQHFKTFSERLKDFPVTVDYLNRFRTTKQRNTVLEGVANGSVDIV
IGTHQLTNKKLQFKDLGLLVIDEEQKFGVAVKDKLKTIKENVDTLTLTATPIPRTLQFSL
MAARDLSVIKTAPPNRHPIETNVIRFSEETIRDAISYEISRGGQVFFIHNRIENIKEVAG
LIQRLVPNAKICIGHGQMEGKKLEELMLAFMNGEFDVLVSTTIIESGLDVPNANTIFINN
ANNFGLSDLHQMRGRVGRSNKKAFCYFITPAYHMMTTDARKRIEALELFSELGSGLNIAM
KDLEIRGAGDLLGGEQSGFINDIGFDTYQKILQEAIEELKENEFKDLYPTDENTPKEYVK
DVQIETGFEILIPDAYVNSVTERLSLYNDLGKLTKEEELLTFEKQIVDRFGEYPSEVQDL
LDSVRIKWLAKELGLEKIILKQKRLLGYFIADQQSKFYETDGFTRMLQYVQENPKSCVMK
QKETKNGLRLLVTFIRIDSVKTALNLLREI
NT seq
3333 nt
NT seq
+upstream
nt +downstream
nt
ttgagcaaacaattgattgtaaaccattaccaacaatctgataccgtcaaacagattgtt
aaagagcttcaacaagaacaaaaccactttcaaatatcgaatttggttggttcttcgttg
tcttttgttatttctgaaacttttaaaaaagccgaaaaaccctatttattaatttttaat
gataaggaagaagccgcctattatttaaacgatttagagcaattattaggcgataaaaat
gtgttattttatccaggttcgtatcgccgaccgtatcagattgaagaaactgataacgcc
aatgttttattgcgttcagaggttttaaatcggattaattcgagaagaaaacctgcaatt
attgtaacgtatccgacggctttatttgaaaaagtagtcactaaaaaagaacttgataaa
aacactttgaaaattacagttggagaaaatatatctcccgattttgtaaatgaagtattg
tttgaatatcagtttaatcgtgttgattttgttactgaacctggtgatttttcagttcgt
ggtggaattattgatgttttttcattttcgaacgatgaaccttatcgaatggagtttttt
ggcgatgaagtagaaagtatccgaacttttgatgtggaaacgcagttatcaaaagaaaaa
caacagaaagtaagtattatgcctaatgttgaaaacaaagggctacaagaaaatagagaa
agttttttaaaatatatatcggctaaaacagcaatttttgtaaaagatatagctacaatt
acaacaaatttagatacgttttttaaaaaagcaactgcttccttcgatgaattatcaaca
gaaataaaacattcaaaaccatcggagttattttgtgatgctgctttaattcaagaagaa
ttacaaaaatttacgagggtaaatatggggaaggctgttatcaaaaatataacaaatatt
gtttttgaaacgcatccgcagccttcttttaataaaaaattcgatttgttaattcagaat
tttaacgagttttcagcaaaaggatttaccaattatattttttgttctaatgataaacaa
gctcagcgttttcatgatatttttgatgataacgacacggaagtatcctatgaaaccatt
gtttttcctttgtatcaaggatttgtagatattcaaaataaaattgtttgttatactgac
catcaaatatttgagcgttattataaatttcgcttaaaaaatggctatgaaaaaaagcaa
tccatcactttacaagaacttaccagattagaaattggcgattatgtaacacatatcgat
catggaattggaaaatttggcgggcttcaaaaaattgatgtagaaggaaaaaaacaagaa
gcaattaagttaatttatggcgatagagatattttatatgtgagtattcactcgttacat
aaaatttcaaagtttaacggaaaagacggaaaaccgcctaaaatatataaattaggttcg
ggtgcttggaaaaaagtaaaacagaaaaccaaggctcgagtgaaacatattgcgtttaat
ttaattcaattatacgctaaaagaaaattgcaaaaaggctacgcttttgcgcctgatacg
cacatgcaacacgagttggaagctagttttatttatgaagatacacccgatcagtttaca
tctacgcaagatgtaaaaaccgacatggaaaaaccgcaacccatggataggttagtttgt
ggtgatgttggttttggtaaaacagaagtcgctattcgtgcagcttttaaagcggtagat
aatggaaaacaagtagcaattttagttcctactactattttagcttttcaacattttaaa
actttttcggagcgtttaaaagattttcctgttacggttgattatttaaatcgttttaga
accacaaaacaacgaaatactgttttagaaggtgttgcaaatggaagtgtagatattgta
ataggaacgcatcaattaaccaataaaaaattacaatttaaagatttaggattgttagtt
attgatgaagaacaaaagtttggagttgccgtaaaagacaagttaaaaactatcaaagaa
aatgtagatacgctaacattaacagctacgccaataccaagaaccctacaatttagtttg
atggcagcgagagatttatcagtaataaaaacagcgccaccaaatcgtcatcctattgaa
accaatgtcatccgctttagcgaagaaactattcgagatgcaatttcttatgaaatttct
cgtggaggacaggtcttttttatccataatagaatcgaaaatattaaagaagtagctggt
ttaattcaacgtttagttccgaatgctaaaatttgtatcggtcatgggcaaatggaaggg
aagaagctagaagaattaatgcttgcttttatgaatggtgaatttgatgtattggtgtca
accactattattgaaagtggattggacgtgccaaatgcgaatactatttttatcaacaat
gcgaataacttcggattgtcagacctgcaccaaatgcgaggtcgtgtagggcgttcgaat
aaaaaagcattctgttattttattacgccagcctatcatatgatgactacagatgcgagg
aaacgtatcgaagctttagagttattttcagaattaggaagtggtttaaatatcgccatg
aaagatttagaaattcgtggagctggagatttattaggaggtgaacaaagtggatttatc
aatgatattggctttgatacgtatcagaaaatattacaagaagctattgaagaacttaaa
gaaaatgagtttaaagatttatatcctacggatgaaaatacgccgaaagaatatgtaaaa
gatgtacaaattgaaacaggttttgaaattcttattcctgatgcttatgtaaattcagta
actgaaagattaagtttatataatgatttagggaaattaacaaaagaagaagagttatta
acatttgaaaaacaaattgttgataggtttggagaatatccatcagaagtacaagattta
ttagacagtgttcgtataaaatggcttgcgaaagaattagggcttgaaaaaattatatta
aaacaaaaacgtttattaggctattttatagctgaccagcaaagtaaattttatgaaact
gatggatttacaagaatgttgcaatatgtacaggaaaatccaaaaagttgtgtaatgaaa
cagaaagaaaccaaaaatggcttacgattattagttacttttattcgaattgattcagta
aaaacggctttaaacttgttgcgagaaatataa
DBGET
integrated database retrieval system
