Tenacibaculum dicentrarchi: AUW17_02635
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Entry
AUW17_02635 CDS
T04208
Name
(GenBank) transcription termination factor Rho
KO
K03628
transcription termination factor Rho
Organism
tdi
Tenacibaculum dicentrarchi
Pathway
tdi03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdi00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
AUW17_02635
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdi03021
]
AUW17_02635
03019 Messenger RNA biogenesis [BR:
tdi03019
]
AUW17_02635
Transcription machinery [BR:
tdi03021
]
Prokaryotic type
Bacterial type
Other transcription-related factors
Transcription termination factor
AUW17_02635
Messenger RNA biogenesis [BR:
tdi03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Other RNA degradosome components
AUW17_02635
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
Rho_RNA_bind
ATP-synt_ab
Rho_N
NACHT
OB_RNB
Mor
AAA_25
AAA_22
Motif
Other DBs
NCBI-ProteinID:
ALU74229
LinkDB
All DBs
Position
601135..602958
Genome browser
AA seq
607 aa
AA seq
DB search
MLEISELKTKKLIDLQVIAKTIGLTKVSQLKKLDLVYKILDAQAEEASANQAKPIAEKPK
RKRIEKSEENTKQPAKEIKQEVEQKKPLKVAENTAEQAVKKVEEKTDFEAKNIKFGVKKA
VKKQEKEAVKKGSISDKDADKTTETAKKEVQETVEAPSKSAVKKQAPKPVSRPRPRAVVE
AAKKQGPKPRTQVEAKKTVPRPRAVVEAAKKPQHKNQHQNKPAHKSGNKYRDPDFEFDGI
IESEGVLEMMPDGYGFLRSSDYSYLSSPDDIYVSQSQIKLFGLKTGDTVLGNVRPPKEGE
KYFPLIRVSKINGLNPNIVRDRVSFEHLTPLFSDEKFNLAEKGSSLSTRIIDIFSPIGKG
QRGMIVSQPKTGKTMLLKDVANAIAANHPEVYQIVLLIDERPEEVTDMKRNVRGEVVAST
FDEPADKHVRVANIVLEKAKRLVECGHDVVILLDSITRLARAYNTVAPASGKILSGGIDA
NALHKPKRFFGAARNIENGGSLTIIATALTETGSKMDEVIFEEFKGTGNMELQLDRNISN
RRIYPAIDLIKSSTRRDDLLLDPKTVKRMWVLRKYLADMNPVEAMTFINDRIRVSKNNEE
FLISMNG
NT seq
1824 nt
NT seq
+upstream
nt +downstream
nt
atgctcgagatttcagaattaaagactaaaaaattaatagatttacaagtaattgcaaaa
acgataggtttaaccaaagtaagtcaattaaaaaaattagatttggtttataaaatttta
gatgcacaagcagaagaagctagtgctaatcaagctaagccaatagctgaaaaacctaag
cgaaaaagaatagaaaaatccgaagaaaacaccaaacagccagctaaagaaataaagcaa
gaagtggaacaaaaaaaaccattgaaagttgcagagaacaccgcagaacaagctgttaaa
aaggtagaagaaaaaacggattttgaagctaaaaatataaaatttggtgtaaaaaaagct
gttaaaaagcaagaaaaagaagcagttaaaaaaggaagcatttctgataaagatgccgat
aaaacaacagaaacagctaaaaaagaagttcaagaaacggttgaagcacctagtaaatca
gctgtaaaaaaacaagcaccaaaacctgtttcaagaccacgaccaagggcagtcgttgag
gcggctaaaaagcaaggaccaaaaccaagaactcaagtagaagctaaaaaaacagtgcca
cgaccaagggcagtagttgaagcggctaaaaaaccacaacataaaaatcagcatcaaaat
aaaccagcacataaaagtggtaataaatatagagatcctgattttgaatttgatggaatt
attgaaagtgaaggagttttagaaatgatgcctgacggatatggtttcttacgctcatca
gattatagttatttatcatcgcctgatgatatttatgtatcgcaatcacaaataaaatta
tttggtttaaaaacaggagatactgttttaggaaatgtccgtccgcccaaagaaggtgaa
aaatacttcccattaattagagtatcaaaaattaacggtttaaacccgaatattgttcgc
gatagagtttcgtttgaacatttaacgcctttattttcagatgaaaaattcaatttagcc
gaaaaaggaagttctttatcgactagaattattgatatattttctcctatcggaaaaggg
cagcgtggtatgattgtatcgcaaccaaaaacgggtaaaacaatgttattaaaggatgtg
gcaaatgctattgctgcaaatcatcctgaagtatatcaaattgttttattaattgatgaa
agaccagaagaggttaccgacatgaaacgtaatgttcgtggtgaggtagttgcttcaacc
tttgatgaacctgccgataaacatgtacgtgttgcgaatattgttttagaaaaagcaaaa
cgtttagtagaatgtgggcatgatgtagtaattcttttagattcaattacacgtttggca
agagcctataacacggttgcaccagcttcaggtaaaattttatcaggaggtattgatgcc
aacgctttacacaaaccaaaacgtttctttggagctgctcgtaatattgaaaacggagga
tcgttaacgattatagctaccgcgcttaccgaaactggttcaaaaatggatgaggttatc
tttgaagaatttaaaggaacaggaaatatggaactacaattagatcgtaatatttctaat
cgtagaatttacccagccattgatttaattaaatcaagtacccgtcgtgacgatttatta
ttagacccaaaaacggtaaaacgtatgtgggtgctacgtaaatatttagccgatatgaac
cctgtagaagcaatgacctttattaatgacagaattagagtatctaaaaataacgaagaa
tttttaatttcgatgaacggataa
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