Torulaspora delbrueckii: TDEL_0C05940
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Entry
TDEL_0C05940 CDS
T02236
Symbol
TDEL0C05940
Name
(RefSeq) hypothetical protein
KO
K12880
THO complex subunit 3
Organism
tdl
Torulaspora delbrueckii
Pathway
tdl03013
Nucleocytoplasmic transport
tdl03040
Spliceosome
Brite
KEGG Orthology (KO) [BR:
tdl00001
]
09120 Genetic Information Processing
09121 Transcription
03040 Spliceosome
TDEL_0C05940 (TDEL0C05940)
09122 Translation
03013 Nucleocytoplasmic transport
TDEL_0C05940 (TDEL0C05940)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdl03019
]
TDEL_0C05940 (TDEL0C05940)
03041 Spliceosome [BR:
tdl03041
]
TDEL_0C05940 (TDEL0C05940)
Messenger RNA biogenesis [BR:
tdl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
TREX complex
TDEL_0C05940 (TDEL0C05940)
Spliceosome [BR:
tdl03041
]
Complex C
Other components
EJC/TREX
TDEL_0C05940 (TDEL0C05940)
Other splicing related proteins
Spliceosome associated proteins (SAPs)
TREX complex
TDEL_0C05940 (TDEL0C05940)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Beta-prop_THOC3
Beta-prop_EML_2
WD40_WDHD1_1st
Beta-prop_WDR5
WD40_CDC20-Fz
Beta-prop_WDR3_1st
WD40_Prp19
Beta-prop_IFT122_1st
ANAPC4_WD40
WD40
Beta-prop_WDR3_2nd
Beta-prop_WDR36-Utp21_2nd
Beta-prop_WDR36-Utp21_1st
EIF3I
Beta-prop_RIG_2nd
Beta-prop_Aladin
WDR55
Beta-prop_HPS5
Beta-prop_WDR90_POC16_2nd
WD40_MABP1-WDR62_2nd
Beta-prop_VPS8
Beta-prop_CAF1B_HIR1
WD40_Gbeta
Beta-prop_NUP159_NUP214
Beta-prop_TEP1_2nd
Beta-prop_EIPR1
Beta-prop_ACSF4
Beta-prop_WDR19_1st
Beta-prop_NOL10_N
Beta-prop_EML
Beta-prop_Vps41
Beta-prop_SCAP
Beta-prop_WDR35_TULP_N
PAC11
WD40_MABP1-WDR62_1st
NBCH_WD40
MIOS_WD40
SAM_lyase
Motif
Other DBs
NCBI-GeneID:
11501901
NCBI-ProteinID:
XP_003680694
UniProt:
G8ZSJ1
LinkDB
All DBs
Position
3:complement(1070975..1072264)
Genome browser
AA seq
429 aa
AA seq
DB search
MATVKTDDTGLLQQRYMTPELATAVTEKLLTGLMNKSQTEEIQDDRYALVVSRNQSRFLS
SLGEDPVLSLEINPSGKSVAYSRADGSLTIWLITGPSFARSKKIYITEVAGPDKCVSSLS
WNCDEINQFATVFNSSEIFIWAIDERKKNASKVRTLSVGAKVKLSKCLYDPTGRWLVTLA
KSDELHLFDVKKDFELQTVLELNQIIPDDSIQSVNWNNLGSHLFLGLKSGRLAVLEVGET
FKLCICLQAQQGAITSVAVDPWGRFMVTGSTDGTCAVWDLSSMCCSLLIADVNSSVVSLD
IDHSGKVLAICTEKGELQLRDIDTGKPLLEHQAKLGGPDIVAKFYPDKAWMISSVKGDLL
QNHSTPSTYDSLTGLWKVEYEKAITGSRIKAPANKPVRKIKIIVMKETVSQNGTSPGMGG
FLVGDELLS
NT seq
1290 nt
NT seq
+upstream
nt +downstream
nt
atggctacggtgaagactgatgacacagggctattacagcaaagatatatgaccccggag
ttggcgaccgcagtaactgagaagctgttgactggtctgatgaacaaaagtcaaaccgaa
gagattcaagatgatagatatgcacttgtggtatcgagaaaccaatctagattcctctca
tctctaggcgaggatccagttctttctttggagataaacccttcaggaaaatctgtagca
tatagtcgagcagacggttccttgaccatttggctcataacaggaccttcgtttgcccgc
tccaagaaaatttacattactgaagttgcagggcctgataaatgtgtgagctcactgtcg
tggaactgcgatgagatcaatcagtttgctacggttttcaatagctctgagatttttata
tgggctattgacgagaggaagaaaaacgcttccaaggtcagaacgttatctgtgggggct
aaggtgaagctatcgaagtgtttatatgacccgacgggaagatggcttgttacattggca
aaatccgacgaattacatctttttgatgtcaagaaagatttcgaactgcagacggtgctt
gaactaaatcaaattatcccagatgactcgatacaatctgtgaattggaacaacttgggt
tcccacctttttctaggtctaaagagtggaagattagctgtgctcgaagttggagagacc
tttaagctatgtatctgtctgcaggctcaacaaggtgcgataacatcagtagctgttgat
ccctggggtaggtttatggttactggaagtactgatggaacttgcgccgtctgggatttg
tcctcaatgtgttgttcgttgctgatagccgacgtaaactcttcagttgtctcactagac
attgatcactcaggaaaagtactagcaatatgcactgagaagggagagctacaattaaga
gatatagatacggggaaaccacttttggagcatcaagcaaaacttggcgggccagatatc
gttgcaaaattctacccagataaggcatggatgatttcatcagttaaaggagatctctta
caaaaccattcaaccccaagtacatatgacagtcttacaggtctctggaaagttgaatat
gagaaagccattactggttcacgtatcaaagcccctgcaaataaaccagttaggaaaatc
aaaatcatagtcatgaaagaaaccgtatcacaaaacgggaccagcccaggaatgggaggt
tttctggtaggcgatgaattgttgtcatga
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