KEGG   Torulaspora delbrueckii: TDEL_0C05940
Entry
TDEL_0C05940      CDS       T02236                                 
Symbol
TDEL0C05940
Name
(RefSeq) hypothetical protein
  KO
K12880  THO complex subunit 3
Organism
tdl  Torulaspora delbrueckii
Pathway
tdl03013  Nucleocytoplasmic transport
tdl03040  Spliceosome
Brite
KEGG Orthology (KO) [BR:tdl00001]
 09120 Genetic Information Processing
  09121 Transcription
   03040 Spliceosome
    TDEL_0C05940 (TDEL0C05940)
  09122 Translation
   03013 Nucleocytoplasmic transport
    TDEL_0C05940 (TDEL0C05940)
 09180 Brite Hierarchies
  09182 Protein families: genetic information processing
   03019 Messenger RNA biogenesis [BR:tdl03019]
    TDEL_0C05940 (TDEL0C05940)
   03041 Spliceosome [BR:tdl03041]
    TDEL_0C05940 (TDEL0C05940)
Messenger RNA biogenesis [BR:tdl03019]
 Eukaryotic type
  mRNA surveillance and transport factors
   Transport factors
    TREX complex
     TDEL_0C05940 (TDEL0C05940)
Spliceosome [BR:tdl03041]
 Complex C
  Other components
   EJC/TREX
    TDEL_0C05940 (TDEL0C05940)
 Other splicing related proteins
  Spliceosome associated proteins (SAPs)
   TREX complex
    TDEL_0C05940 (TDEL0C05940)
SSDB
Motif
Pfam: Beta-prop_THOC3 Beta-prop_EML_2 WD40_WDHD1_1st Beta-prop_WDR5 WD40_CDC20-Fz Beta-prop_WDR3_1st WD40_Prp19 Beta-prop_IFT122_1st ANAPC4_WD40 WD40 Beta-prop_WDR3_2nd Beta-prop_WDR36-Utp21_2nd Beta-prop_WDR36-Utp21_1st EIF3I Beta-prop_RIG_2nd Beta-prop_Aladin WDR55 Beta-prop_HPS5 Beta-prop_WDR90_POC16_2nd WD40_MABP1-WDR62_2nd Beta-prop_VPS8 Beta-prop_CAF1B_HIR1 WD40_Gbeta Beta-prop_NUP159_NUP214 Beta-prop_TEP1_2nd Beta-prop_EIPR1 Beta-prop_ACSF4 Beta-prop_WDR19_1st Beta-prop_NOL10_N Beta-prop_EML Beta-prop_Vps41 Beta-prop_SCAP Beta-prop_WDR35_TULP_N PAC11 WD40_MABP1-WDR62_1st NBCH_WD40 MIOS_WD40 SAM_lyase
Other DBs
NCBI-GeneID: 11501901
NCBI-ProteinID: XP_003680694
UniProt: G8ZSJ1
LinkDB
Position
3:complement(1070975..1072264)
AA seq 429 aa
MATVKTDDTGLLQQRYMTPELATAVTEKLLTGLMNKSQTEEIQDDRYALVVSRNQSRFLS
SLGEDPVLSLEINPSGKSVAYSRADGSLTIWLITGPSFARSKKIYITEVAGPDKCVSSLS
WNCDEINQFATVFNSSEIFIWAIDERKKNASKVRTLSVGAKVKLSKCLYDPTGRWLVTLA
KSDELHLFDVKKDFELQTVLELNQIIPDDSIQSVNWNNLGSHLFLGLKSGRLAVLEVGET
FKLCICLQAQQGAITSVAVDPWGRFMVTGSTDGTCAVWDLSSMCCSLLIADVNSSVVSLD
IDHSGKVLAICTEKGELQLRDIDTGKPLLEHQAKLGGPDIVAKFYPDKAWMISSVKGDLL
QNHSTPSTYDSLTGLWKVEYEKAITGSRIKAPANKPVRKIKIIVMKETVSQNGTSPGMGG
FLVGDELLS
NT seq 1290 nt   +upstreamnt  +downstreamnt
atggctacggtgaagactgatgacacagggctattacagcaaagatatatgaccccggag
ttggcgaccgcagtaactgagaagctgttgactggtctgatgaacaaaagtcaaaccgaa
gagattcaagatgatagatatgcacttgtggtatcgagaaaccaatctagattcctctca
tctctaggcgaggatccagttctttctttggagataaacccttcaggaaaatctgtagca
tatagtcgagcagacggttccttgaccatttggctcataacaggaccttcgtttgcccgc
tccaagaaaatttacattactgaagttgcagggcctgataaatgtgtgagctcactgtcg
tggaactgcgatgagatcaatcagtttgctacggttttcaatagctctgagatttttata
tgggctattgacgagaggaagaaaaacgcttccaaggtcagaacgttatctgtgggggct
aaggtgaagctatcgaagtgtttatatgacccgacgggaagatggcttgttacattggca
aaatccgacgaattacatctttttgatgtcaagaaagatttcgaactgcagacggtgctt
gaactaaatcaaattatcccagatgactcgatacaatctgtgaattggaacaacttgggt
tcccacctttttctaggtctaaagagtggaagattagctgtgctcgaagttggagagacc
tttaagctatgtatctgtctgcaggctcaacaaggtgcgataacatcagtagctgttgat
ccctggggtaggtttatggttactggaagtactgatggaacttgcgccgtctgggatttg
tcctcaatgtgttgttcgttgctgatagccgacgtaaactcttcagttgtctcactagac
attgatcactcaggaaaagtactagcaatatgcactgagaagggagagctacaattaaga
gatatagatacggggaaaccacttttggagcatcaagcaaaacttggcgggccagatatc
gttgcaaaattctacccagataaggcatggatgatttcatcagttaaaggagatctctta
caaaaccattcaaccccaagtacatatgacagtcttacaggtctctggaaagttgaatat
gagaaagccattactggttcacgtatcaaagcccctgcaaataaaccagttaggaaaatc
aaaatcatagtcatgaaagaaaccgtatcacaaaacgggaccagcccaggaatgggaggt
tttctggtaggcgatgaattgttgtcatga

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