Torulaspora delbrueckii: TDEL_0D01990
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Entry
TDEL_0D01990 CDS
T02236
Symbol
TDEL0D01990
Name
(RefSeq) hypothetical protein
KO
K12598
ATP-dependent RNA helicase DOB1 [EC:
5.6.2.6
]
Organism
tdl
Torulaspora delbrueckii
Pathway
tdl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TDEL_0D01990 (TDEL0D01990)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdl03019
]
TDEL_0D01990 (TDEL0D01990)
03041 Spliceosome [BR:
tdl03041
]
TDEL_0D01990 (TDEL0D01990)
03009 Ribosome biogenesis [BR:
tdl03009
]
TDEL_0D01990 (TDEL0D01990)
03016 Transfer RNA biogenesis [BR:
tdl03016
]
TDEL_0D01990 (TDEL0D01990)
Enzymes [BR:
tdl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TDEL_0D01990 (TDEL0D01990)
Messenger RNA biogenesis [BR:
tdl03019
]
Eukaryotic type
mRNA degradation factors
3'-5' decay
TRAMP complex
TDEL_0D01990 (TDEL0D01990)
Spliceosome [BR:
tdl03041
]
Complex B
U4/U6.U5 tri-snRNP components
U4/U6.U5 tri-snRNP related factors
TDEL_0D01990 (TDEL0D01990)
Complex C
U4/U6.U5 tri-SnRNP related factors
TDEL_0D01990 (TDEL0D01990)
Ribosome biogenesis [BR:
tdl03009
]
Eukaryotic type
Pre-60S particles
Helicases
TDEL_0D01990 (TDEL0D01990)
Transfer RNA biogenesis [BR:
tdl03016
]
Eukaryotic type
tRNA degradation factors
TRAMP complex
TDEL_0D01990 (TDEL0D01990)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
MTR4_beta-barrel
DSHCT
DEAD
MTR4-like_stalk
DEXQc_Suv3
Helicase_C
DUF155
Helicase_dom4_arc
nSTAND3
HTH_Tnp_ISL3
AAA_22
YodE
Death_3
Motif
Other DBs
NCBI-GeneID:
11502218
NCBI-ProteinID:
XP_003680994
UniProt:
G8ZT39
LinkDB
All DBs
Position
4:complement(384739..387966)
Genome browser
AA seq
1075 aa
AA seq
DB search
MDGEDLFDVFNEDTSNAPETPLEEVEKVDDTPVQDGSDKKRQLNDEESSSDNKTAEETDN
KRKKQERKLIDEKKKKSTLVPVVTDAFEQEASREVNASAGLMNAATTQADEDGKVKLSHQ
VRHQVALPPNFDYKPIGEHKRQNEARTYPFTLDPFQDTAISCIDRGESVLVSAHTSAGKT
VVAEYAIAQSLREKQRVIYTSPIKALSNQKYRELLAEFGDVGLMTGDITINPDAGCLVMT
TEILRSMLYRGSEVMREVAWVVFDEVHYMRDKERGVVWEETIILLPDKVHYVFLSATIPN
AMEFAEWICKIHVQPCHIVYTDFRPTPLQHYLFPAHGEGIYLVVDEKSTFREENFQKAMA
SISNQSGDDPNSVDSRGKKGQSFKGGAAKGDAKGDIYKIVKMIWKRKYNPVIVFSFSKRD
CEELALKMSKLDFNSDDEKDALTKIFNNAIALLPEVDRELPQIKHILPLLRRGIGIHHSG
LLPILKEVIEILFQEGFLKVLFATETFSIGLNMPAKTVVFTSVRKWDGQQFRWVSGGEYI
QMSGRAGRRGLDDRGIVIMMIDEKMEPQVAKGMVKGQADRLDSAFHLGYNMILNLMRVEG
ISPEFMLENSFFQFQNIVSVPAMEKKLIELQTEADKIEIEDEDNVKEFYEIRQTLDGYNE
DVRHVITHPANILSFLQPGRMVEVMVDNKDTYGWAVVVDFAKRMSKRDPSAEYTDHESYI
VNVVVNTMYADSPLNLIKPFNPRFPEGIRPALEGEKTVCAIIPITLESIRRVGNLRLFMP
KDIKASGQKEVVGKSLQEVARRFPDGIPLIDPVRNMKIEDDDFTKLLKKVEVLEKKLFSN
PLAESVRLKELYENFSRKRALIDETKQLKHKISESQAVIQLDDLRRRKRVLRRLGFCTQS
DIIELKGRVACEISSGDELLLTELIFNGNFNDLTPQQAAALLSCFAFQERCKEAPRLKPE
LAEPLKAMREAAAKIAKIMKDSKIEVVEKDYVESFRHELMEVVYEWCKGASFTQICKMTD
VYEGSLIRMFKRLEELVKELVDVANTIGNSALKEKMEAVLNLIHRDIVSAGSLYL
NT seq
3228 nt
NT seq
+upstream
nt +downstream
nt
atggatggagaggatttatttgatgtcttcaatgaggacacttcgaatgctccagaaact
cctttggaagaagtagaaaaggtagatgatactcctgttcaagatggaagcgacaagaaa
cgtcaattaaatgatgaagagtctagttcagataataaaacggcagaggaaactgacaat
aagagaaagaaacaagagaggaaacttattgacgagaagaagaaaaaatctactttagtg
cctgtggtcactgatgctttcgagcaagaagcctcaagagaagtcaatgcttcggcaggt
ctcatgaatgcagcaaccactcaagcggatgaagacggaaaagttaagctttcgcatcaa
gtgcgccaccaagttgcgcttccgcctaattttgattacaaacctatcggtgaacataag
agacagaacgaggctcgtacgtaccctttcacactggatcctttccaagacactgcaatt
tcttgtattgatagaggggaatcggttttagtctctgctcacacttctgctggtaaaaca
gtggttgccgaatatgccatcgctcaatctttaagagagaagcaaagagtgatctataca
tcgcccatcaaggccctttcaaaccagaaatatagagagctactcgcagaatttggcgat
gtgggtttgatgactggtgacattactattaatccggatgccgggtgtctagttatgact
acagaaattctacgaagcatgttatacagaggtagtgaggttatgagagaagttgcatgg
gtcgttttcgatgaagtgcattatatgagagacaaagagcgtggtgtagtctgggaagaa
acaatcatcctactgccggataaggttcattacgtctttttgtcggctaccattccaaat
gctatggaattcgcggaatggatttgtaagattcacgttcaaccttgccatatcgtttac
acagattttcgtcctacccctctccagcactatctatttcctgctcatggtgaaggaata
tacctggtggttgacgaaaagagcactttcagagaagaaaattttcagaaagccatggcg
tctatcagtaaccaatccggagacgatcccaactctgtggactctagaggtaagaaagga
cagtctttcaagggtggtgcagctaaaggagatgcgaaaggtgacatttacaaaattgtc
aagatgatatggaaaagaaagtataacccagtcattgtcttttccttcagtaagcgtgat
tgtgaggagctggctttgaagatgtcaaagctagatttcaattctgatgatgagaaagat
gccttgacaaaaattttcaacaacgctattgcattgttgcctgaagtcgacagggaacta
cctcaaattaagcacattttgcctctactaagaagaggtattggtatccatcattcaggt
cttttacctattttgaaggaagtgatcgaaattctgtttcaagaaggtttcttgaaagtt
ctattcgcaaccgaaactttctccattggtctaaacatgcctgcaaagactgttgtgttt
acttccgtgagaaaatgggatgggcagcaattccgttgggtttctgggggtgaatatatc
cagatgtcaggccgggctggtcgtcgtggtctggacgatcgtggtattgtcatcatgatg
atcgacgagaagatggagcctcaggttgcaaagggaatggttaagggacaagctgacaga
ttggactcggccttccatttgggatacaacatgattcttaacttgatgagagttgaaggt
atatcgcctgagtttatgttggagaattcgttcttccaattccaaaatatagtgtcggtc
ccagccatggagaagaaactgatcgagctacaaacagaagctgacaagattgaaattgaa
gacgaagacaatgttaaagagttttatgagatcagacaaacattggatggatacaacgaa
gacgttcgtcatgttattactcatcctgctaatatattaagcttcctccagccaggaagg
atggtagaagttatggtcgacaacaaagatacctatgggtgggcagttgttgtggatttt
gccaagagaatgagcaagcgcgatccatccgcagaatacaccgatcatgagtcgtacatt
gtcaatgtagtggtaaacacgatgtatgctgactcaccactaaacctcattaaaccgttc
aatcctagatttcctgaaggtattcgccctgccttagaaggggagaaaactgtatgtgca
atcatcccaatcactctggaatcgattcgtagagtcggaaatttgagacttttcatgcca
aaagacatcaaggctagtggacaaaaggaggtagtaggaaagtccctccaagaggttgcc
cgaaggttcccagatggcattcctctgatagatccagttaggaacatgaagatagaagat
gatgatttcacaaagctattaaaaaaggttgaagtattagaaaagaaattgttctccaat
cctttggcagagtctgtcaggttgaaagaactgtatgagaacttcagtaggaagcgtgct
ctgatcgatgagacaaagcaattgaaacacaaaatcagtgaatcacaggctgtgattcaa
ctagatgacttgcgtcgccgtaagagagtcttgcgtcgtcttggattttgcactcaaagt
gatatcatagagttgaaaggtagagtagcatgtgaaatttctagtggtgacgagctcctg
ttgacagagttgattttcaatggtaactttaacgatttgacgccccagcaagcggctgct
ttgctttcatgtttcgcgttccaagaacgttgtaaggaagctccacgtctcaagcccgaa
ctagctgaacctctgaaggctatgagggaagcggcagccaaaattgccaagattatgaag
gattccaagatcgaggttgtggagaaagactatgttgagagctttagacacgagctaatg
gaagtcgtctatgaatggtgtaaaggcgcaagtttcacccaaatctgtaagatgacagac
gtatatgagggttcgctgattagaatgttcaaaagactggaagagcttgtcaaagagttg
gtcgacgttgccaacacgataggtaatagtgcactcaaagaaaagatggaagcagtgttg
aacctgatacatagagacattgtctcagcaggttctttgtatctatga
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