Torulaspora delbrueckii: TDEL_0E01090
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Entry
TDEL_0E01090 CDS
T02236
Symbol
TDEL0E01090
Name
(RefSeq) hypothetical protein
KO
K12599
antiviral helicase SKI2 [EC:
5.6.2.6
]
Organism
tdl
Torulaspora delbrueckii
Pathway
tdl03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdl00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
TDEL_0E01090 (TDEL0E01090)
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdl03019
]
TDEL_0E01090 (TDEL0E01090)
Enzymes [BR:
tdl01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.6 RNA 3'-5' helicase
TDEL_0E01090 (TDEL0E01090)
Messenger RNA biogenesis [BR:
tdl03019
]
Eukaryotic type
mRNA surveillance and transport factors
Transport factors
eIF4F and regulatory proteins
TDEL_0E01090 (TDEL0E01090)
mRNA degradation factors
3'-5' decay
Ski complex
TDEL_0E01090 (TDEL0E01090)
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DSHCT
Ski2_N
Ski2_beta-barrel
DEAD
Helicase_C
ResIII
MTR4-like_stalk
DEXQc_Suv3
MTR4_beta-barrel
Motif
Other DBs
NCBI-GeneID:
11503753
NCBI-ProteinID:
XP_003681563
UniProt:
G8ZUQ8
LinkDB
All DBs
Position
5:222389..226162
Genome browser
AA seq
1257 aa
AA seq
DB search
MAFTEKSVHELWHSLKEITNDDVELFHDKISTFELKDNDSSDDVIREKFLKPSNVLPWSL
LDTVQSVPQGKSFESYDYKGLLRIPEPIGRTSYHSKRRGLEGRICGYKEEVNLKEVTNAN
AANSLSLGRSINTHGNAIKGSTSQLPFAPGGITMNAIHDSAQGVSSMEKVTRLLHKDQQG
LFDVPNGLERGIRPESTRVNEEPVDQVTELNQVDNELEIENELEDEKLKQERETDSRTTA
AIFGANQETGTDIDDLLPMGIDFARNVVTAQKNLDRKEWAHVVDLNHKIDNFDELIPNPA
RTWPFELDTFQKEAVYHLEQGDSVFVAAHTSAGKTVVAEYAIAMSKRNMTKTIYTSPIKA
LSNQKFRDFKETFEDVGVGLITGDVQINPEANCLIMTTEILRSMLYRGADLIRDVEFVIF
DEVHYVNDQDRGVVWEEVIIMLPQHVKFILLSATVPNTYEFANWIGRTKQKNIYVISTPK
RPVPLEINIWAKNQLIPVISSNKEFLDSNFKKHKDLLAGAPPKDDTKDAKSGRGGGRGGQ
RGGLRGGPRGGQRGGRGGSRGAGAIGSNKSQFYKRGGPSKKTWPDIVNYLKSKDLLPAVV
FVFSKKRCEEYADWLEGVNFCNGKEKSQIFMFIEKSVTRLKKEDRELPQILKIRSLLERG
IAVHHGGLLPIVKELIEMLFAKGLIRVLFATETFAMGLNLPTRTVIFSEIQKHDGTGLRN
LAPGEFTQMAGRAGRRGLDKMGLVIVMAYNEPIQSASFKEVTMGVPTKLQSQFRLTYNMI
LNLLRIEALKVEEMIKYSFSENSKQTLLPEQERKINELEEKMEELQLYDKSGSNVDMDKF
LDAVVRFRKATSQMMEELAKTDAIFHALKVGRLIVFRDADDNARLGFVFRTNMKDNSAVV
MTFTQPNTLSSGESNHLPYIAGLAKYTVSNFKRFEGTKYFMQEVPLTSIELITAYTLKIS
FTDIMKKDDESVKKFEDEVKIILKISQRLKESLAEKKGSLKVHQQILERNNIKNEILSCQ
VINSPDLAEKFLPKYKAFMIKDEINNLRHLMSDQNLNLLPDYEKRLAVLKDAGFIDQNHN
VLLKGRVACEINSGYELVLTELILDNFLGDFEPEEIVALLSVFVYEGRTREEEPPIITPR
LARGKKRIEEIYTQMLKVYETHQIPLTRDEAEFLERKRFALMNVVYEWARGLSFKEIMDI
SLEAEGTVVRVITWLDEICREVKTASIIIGNSNLHMKMSQAQELIKRDIVFAASLYL
NT seq
3774 nt
NT seq
+upstream
nt +downstream
nt
atggcattcactgaaaagtccgttcatgagttgtggcatagtctcaaggagatcactaac
gatgatgtggaacttttccacgacaagatctctactttcgaactaaaggacaacgattca
agcgacgatgttatcagggaaaaattcctaaagccttcaaacgtactgccctggtcttta
ctagatactgtacagagtgtccctcagggaaaatcattcgagagttatgattacaaggga
ctactcagaattccagagcctattggtagaacttcctatcattcaaagcgtagagggctc
gagggacgtatctgcggttacaaggaggaagtaaatttaaaggaagttacaaatgcaaat
gctgccaattctctgtcgttgggcagaagtataaatactcatggtaacgcaataaagggt
tccacttcgcaactgccgtttgcaccaggtgggattacaatgaatgcgatccacgattct
gcgcaaggtgtttcttcgatggaaaaagttactagattattgcataaggatcagcaaggt
ttgtttgatgttccaaacggattggaaaggggcatcagaccagagagtacccgtgtcaat
gaagagccagttgatcaggtcactgagttgaaccaagtcgataacgaacttgagatcgaa
aacgaattggaagatgaaaaactgaaacaagaaagagagacggattccagaaccacagca
gctatctttggtgcgaaccaggagactggtactgatattgatgatctattgcccatggga
atcgattttgcaagaaatgttgtcactgcacaaaaaaatttggatcggaaagaatgggct
catgtcgttgatttgaaccataaaattgacaactttgatgagctgatccccaaccctgct
agaacatggccttttgaattggatactttccaaaaggaggcggtatatcacttagaacaa
ggtgattcggtatttgttgctgcacacacatccgctggtaaaacagtagtggcagaatat
gcaattgcgatgtccaagagaaatatgacaaagacaatctatacatcgcccattaaagct
ctctcaaatcaaaaatttagagattttaaagaaaccttcgaggatgttggtgtcggttta
atcaccggtgatgtccagatcaatccagaggctaactgtttgatcatgactacggaaatc
ttgagatcaatgctttacagaggtgcagatctgatcagagacgtggaatttgttatcttc
gatgaagtgcattacgttaatgaccaggatcgtggtgtggtctgggaagaagttattatc
atgttacctcaacatgtaaaattcatcctgctatctgccacagttcctaatacttatgaa
tttgcgaactggattggtagaactaagcaaaagaatatctatgtcatctctactccaaag
agaccagttcctttagagattaacatttgggcaaagaatcaattgattcccgttataagt
tctaataaagagtttttggattcaaatttcaagaagcataaggatttactggctggtgct
ccaccaaaagatgacacaaaggacgccaagtcaggaaggggtggcggccgcggtggtcag
cgcggtggtctacgtggtggcccccgtggaggtcagcgaggcggccgtggtggctctaga
ggtgcgggggccatagggtcaaacaagagtcagttttacaagaggggcggaccttccaag
aagacttggccagatattgtcaattatctaaaatccaaggatttattaccggcagtggta
ttcgtgttcagtaagaagcgttgcgaggaatatgctgactggcttgaaggtgtcaatttc
tgtaatggtaaggaaaaatctcagattttcatgttcatcgagaaatcagtgacaagacta
aagaaggaagatcgtgaactgcctcaaattcttaagatcagatcgcttttagaaagaggt
atcgcggttcatcatggtggtttattgcccatcgtaaaagaattgatcgagatgcttttc
gctaagggtttgatcagagttctatttgcaacggaaacatttgcaatgggtctaaacttg
ccaacaagaactgttatcttcagtgaaattcaaaaacatgatggtacaggtctgagaaat
ttggctcctggtgagttcacacaaatggctggtagagctggtagaagaggtttggataag
atgggtttggtcattgttatggcatacaacgagccaatacagtcggcttcatttaaggag
gtgacaatgggtgtacctaccaagctgcaatcacaattcagactgacatacaatatgatc
ttgaatctattgagaattgaagctttgaaagttgaagagatgatcaaatattcctttagc
gaaaactccaaacaaacattgttaccagaacaggagagaaagataaatgaactggaagag
aaaatggaagagcttcaattgtacgataagtcaggatccaacgttgatatggataaattc
ttagacgccgtggtcagatttagaaaagcaacttcccagatgatggaggagctagctaag
actgatgcgatctttcatgcattgaaggtaggaagactaattgttttcagagatgccgat
gataatgccagattaggttttgttttccgtacgaacatgaaggacaattcagcggtggta
atgacttttacgcaacccaacacactaagctctggtgaatccaatcatttgccatatata
gcaggattggcaaaatacacggtcagtaacttcaagagatttgaaggtaccaagtatttt
atgcaagaagttcctttgacatcgattgagctcatcacggcttatacgctgaaaatctca
ttcactgacattatgaagaaagatgatgaatccgtcaagaaattcgaggatgaggttaaa
atcatccttaagatttctcagaggttgaaggagagtttggcagagaaaaagggaagtctc
aaagttcatcaacaaattttggaaagaaataatatcaaaaatgaaattctatcttgccag
gtaataaactctccagatttggcagaaaagtttttgcccaaatataaagctttcatgatt
aaagatgagatcaacaacttacgccatttgatgtcagatcaaaacttgaacctgttacct
gattatgagaagaggttagccgttcttaaggacgctggctttattgaccaaaatcacaat
gtgcttctgaaaggtagagttgcgtgcgagattaactcaggatatgagcttgtcctcacc
gagcttatcctggacaattttctcggtgacttcgaacccgaagagatcgttgcattactg
tcggtcttcgtgtatgagggacgtacccgagaggaagagccccctattatcactccaagg
ctggctagagggaagaagcgtatcgaggagatttacactcaaatgctgaaagtttatgaa
actcatcaaattccattgacaagagatgaagccgagttcttggaaaggaagaggttcgca
ttgatgaatgtcgtgtatgaatgggctcgaggattatcattcaaagagataatggatatc
agtctcgaagccgaaggtacagttgtcagggtcatcacatggcttgatgaaatctgtcgt
gaagtcaagacagcatcaataatcatcggtaattccaacctccacatgaaaatgagccag
gcacaagaattgatcaaaagagatatcgttttcgccgcttctttgtacctatag
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