Sulfurimonas denitrificans: Suden_0025
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Entry
Suden_0025 CDS
T00298
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K11927
ATP-dependent RNA helicase RhlE [EC:
5.6.2.7
]
Organism
tdn
Sulfurimonas denitrificans
Pathway
tdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Suden_0025
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdn03019
]
Suden_0025
Enzymes [BR:
tdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Suden_0025
Messenger RNA biogenesis [BR:
tdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Suden_0025
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_19
P-loop_SecA
AAA_22
Utp25_C
ERCC3_RAD25_C
Flavi_DEAD
Motif
Other DBs
NCBI-ProteinID:
ABB43306
UniProt:
Q30UM5
LinkDB
All DBs
Position
30766..31962
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AA seq
398 aa
AA seq
DB search
MSFTTLGLSAPILKAIKDQGYTKPTPIQKQAIPIILSKKDILAGAQTGTGKTAGFTLPLL
ELLSRDKSSTKKRIRALILTPTRELAAQVGESVSIYGKYLSFTSTIIYGGVSINPQLSAL
RKGVDIVIATPGRLLDHLSQKSIDLKDVEFLVLDEADRMLDMGFINDIKKVLAVLPKNKQ
TLLFSATYSDEIKKLSDRLLNSPVLIEVERPNKTAQSIKQIVYPVDKERKRELLVHLIKE
GKWQQVLVFTRTKHGANKLSAQLEKDGISSSAIHGNKSQNARMKALQEFKDGDIRVLVAT
DIAARGIDIDQLPHVINYELPNVPEDYVHRIGRTGRAGSSGDAISLVCIDEHEYLSSIEK
LIKTDIQKVWLKDFKPDPSIKAEPINQGGQRGSHKKRR
NT seq
1197 nt
NT seq
+upstream
nt +downstream
nt
atgtcatttacaacactaggtttatcagctcctatactaaaagctatcaaagatcagggc
tacactaagccaactccaatccaaaaacaagctattccaattatccttagtaaaaaagat
attttagcaggagcacagacgggaacaggtaaaacagctggctttacgcttccacttctt
gagcttttaagcagagataaatcatctactaaaaagagaatccgagctcttattttaacc
ccaacacgagagttggcggcgcaagttggagagagtgtttctatttatggaaaatatctc
tcttttacttcaactattatttacggtggagtaagtataaaccctcagttaagcgctcta
cgaaaaggtgttgatatagttatcgcaactcctggaagattacttgaccatctctctcaa
aaaagcatagatttaaaggatgttgagtttttggtgcttgatgaagcagatagaatgctt
gatatgggctttataaatgatataaaaaaagttttggctgttcttccaaaaaataaacag
acacttcttttttcagctacatattcagatgagattaaaaagctctcagatcgtctctta
aattcaccagttcttatagaagttgaacgtccaaacaaaacagcacaaagcataaagcag
atagtttatccagttgataaagagcgtaagcgtgaacttttggttcatcttataaaagag
ggaaaatggcaacaagtccttgtctttacaagaacgaaacatggagcaaataaattaagt
gcgcaacttgaaaaagatggtataagctcaagcgctatacatggaaacaagagccaaaat
gcgagaatgaaggctctgcaagagtttaaagatggcgatataagagttcttgttgcaaca
gatatagcagcaagagggatagatatagatcaacttccacatgtaataaactatgaactt
ccgaatgtgccagaggattatgttcacagaataggcagaacagggcgtgctggaagcagt
ggagatgcgatatctcttgtttgtatagatgagcatgaatatctatcaagcatagaaaaa
cttataaaaactgatattcaaaaagtttggttaaaagattttaaaccagatccaagcatt
aaagctgagcctataaatcagggcggtcaaagaggttcgcataagaaaagaagataa
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