Sulfurimonas denitrificans: Suden_0354
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Entry
Suden_0354 CDS
T00298
Name
(GenBank) DNA-directed RNA polymerase, subunit beta-prime
KO
K03046
DNA-directed RNA polymerase subunit beta' [EC:
2.7.7.6
]
Organism
tdn
Sulfurimonas denitrificans
Pathway
tdn03020
RNA polymerase
Brite
KEGG Orthology (KO) [BR:
tdn00001
]
09120 Genetic Information Processing
09121 Transcription
03020 RNA polymerase
Suden_0354
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03021 Transcription machinery [BR:
tdn03021
]
Suden_0354
03400 DNA repair and recombination proteins [BR:
tdn03400
]
Suden_0354
Enzymes [BR:
tdn01000
]
2. Transferases
2.7 Transferring phosphorus-containing groups
2.7.7 Nucleotidyltransferases
2.7.7.6 DNA-directed RNA polymerase
Suden_0354
Transcription machinery [BR:
tdn03021
]
Prokaryotic type
Bacterial type
RNA polymerase
Core subunits
Suden_0354
DNA repair and recombination proteins [BR:
tdn03400
]
Prokaryotic type
SSBR (single strand breaks repair)
NER (nucleotide excision repair)
TCR (transcription coupled repair) factors
DNA-directed RNA polymerase complex (RNAP)
Suden_0354
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RNA_pol_Rpb1_1
RNA_pol_Rpb1_5
RNA_pol_Rpb1_2
RNA_pol_Rpb1_3
RNA_pol_Rpb1_4
YqfD
Motif
Other DBs
NCBI-ProteinID:
ABB43635
UniProt:
Q30TP6
LinkDB
All DBs
Position
352228..356739
Genome browser
AA seq
1503 aa
AA seq
DB search
MSKLVPIEVTEDRRPTDIKQIQFRLASPEKVMSWSHGEVKKPETINYRTLKPERDGLFCA
KIFGPVRDYECLCGKYKKMRYKGVVCEKCGVEVTSTKVRRIRMGHIELVTPVAHIWYVSS
LPSRIGTLLGIKMKDLERVLYYEAYIVESGGEAYYDAEAKTPVLKYDVLNEEQYRTLVSR
FGELGFKARMGGEVVRDLLDSIDLVDLFTQLKEDIELTKSEAKTKTIAKRLKVIESFLNS
GNNPAWMMLTVLPVLPPDLRPLVSLDGGKFAVSDVNDLYRRVINRNQRLKRLVELEAPEI
IVRNEKRMLQESVDALFDNGRRANAVKGANKRPLKSLSEIIKGKQGRFRQNLLGKRVDFS
GRTVIVVGPSLSMDECGLPKKMALELFKPHLIAKLEDKGYATTVKAAKKMIEDKTNEVWE
CLAEIVDGYPVLLNRAPTLHKLSIQAFHPKLIDGKAIQLHPLVCAAFNADFDGDQMAVHI
PLSSAAIAEAKVLMLASMNILLPASGKAIATPSQDMVLGIYYITLEKNGVKGSNKLFANV
DEVRIAIEHDALDIHAKVRTRDDGRIIHTTAGRMLLKAILPNFVPSELWNRVMKKKAINE
VVDYVQKHGGIGVTAGFLDRLKNLGFKHATEAGISISIDDIKIPAGKEAKIAESKNRVFE
IQKQFEAGLLTEQERYNKIIDVWTDTNNTLATQMMDLVQTDKAGFNSIHMMADSGARGSA
AQIRQLAGMRGLMAKPSGEIIETPIISNFKEGLNVVEYFISTHGARKGLADTALKTANAG
YLTRKLVDVAQNVKIVEHDCHTHEGIEISDISDQNTLIESLEDRLNGRVLADDVIDPISN
EILFAEGTLLDEVSAKVIAEAGIKTAYIRTPTTCKSENGICALCYGVNLATGQIVRRGEA
VGIIAAQSIGEPGTQLTLRTFHVGGTASSTAQERQVVAEKEGFIRYYNLKTYVSKEGRNI
VANRRNAAVLLVEPKIKAPFSGRVEIQTVHDEVIISVSSKTDTIRYVLRKNEIAKPNELA
GVGGQIEGKYYFPYESGAEVQEYESIVETIKDGWNVPSRIPYASEVLVANGAPVTQKIFA
KEDGVVKYFLLRGDYLERFEGLKAGYEVIEKGLFATVVDSNNREAVRHYIARGSIIVAED
DAVVDPKTLIAKPKNDESTVIAEWDPYSNPIISETSGTVKFEDIIIGTTATEQYDELTGK
TRLMISDHVPAEYKPTIVLASEDGELLRYQVQSKTSIYVEDGAKVKVADIIAKTPKALQK
SSDITGGLPRVSELFEGRRPKATALISEIDGVVSFGKSLRGKIRIIVASDNGILKEYFVD
KSHTPVVNSGDFVHAGERLTSGIISSHELLRIMGVKTLYNYLVSEVQQVYRSQGVNISDK
HIEVIFTQMLRQVKILKSGDTKFIEGDLISKVKFAQENEKIIKLGGRPAIAEPFLVGITR
AAVSADSIISAASFQDTTKVLTEAAVSAKVDDLNDLKENVIIGRTIPVGTGIYKDQEIMF
GYN
NT seq
4512 nt
NT seq
+upstream
nt +downstream
nt
atgagtaaattagtacctattgaagtaacagaagatagaagaccaactgatataaagcag
atacagtttcgtttggcttctcctgaaaaagtgatgtcttggagtcacggagaagtaaaa
aaacctgaaactattaactatcgcacactcaaacctgagcgtgacggacttttttgtgca
aaaatatttggaccagttagagactatgagtgtctttgtggtaaatacaaaaaaatgcgt
tataaaggtgttgtgtgtgagaagtgtggtgttgaagtaacaagcacaaaagttcgccgt
atccgtatggggcatatagaacttgtaactccagtagcacatatttggtatgtgagttca
ttaccttctcgtataggtactcttttaggcattaagatgaaagaccttgagcgcgtacta
tattatgaagcatatatagttgagagcggtggtgaagcatattatgatgcagaagcaaaa
acgccagttttaaaatatgatgttttaaatgaagagcagtaccgtactcttgtatctaga
tttggtgaacttggttttaaagctcgtatgggtggagaagttgttcgcgatcttcttgat
tctatcgatttagttgatctatttactcaactaaaagaagatattgaacttacaaaaagt
gaagcaaaaacaaaaactattgctaagagactaaaagtaatcgagtcatttttaaattca
ggaaataaccctgcatggatgatgttaactgttttacctgtccttccacctgatttgaga
ccacttgtaagtcttgatggtggtaaatttgctgtttcagatgtaaatgacttatatcgt
cgtgtaataaaccgtaatcaacgtcttaaacgtcttgttgagcttgaagcaccagaaatt
attgttagaaatgagaagcgtatgcttcaagaatcagttgatgcactgtttgataacggt
cgtcgtgcaaatgctgttaagggagctaacaaacgtccgcttaagtctttgagcgaaatt
attaaaggtaaacagggtcgttttagacaaaacttgcttggtaaacgtgttgacttctca
ggtcgtacagtaatcgttgttggaccatctctatctatggatgagtgtggattacctaaa
aaaatggcactagagctgttcaagccacatttgattgcaaaacttgaagataagggttat
gcaacaactgttaaagctgcgaaaaagatgattgaagataaaactaatgaagtttgggaa
tgtttggctgagatagttgatggctatccagtactactaaaccgtgcaccaacgcttcat
aagctctcaattcaagcatttcaccctaagctaattgatggaaaagctatacagcttcat
ccattggtttgtgctgcttttaacgccgactttgacggtgaccagatggctgttcacatt
cctttaagttctgctgcaattgctgaagcaaaagtattaatgctagcttctatgaatatt
cttcttcctgcatcaggaaaggctattgctacaccatctcaagatatggttcttggaatt
tactacattacattagagaaaaatggtgtaaaaggttcaaataaactttttgcaaacgta
gatgaagtaagaattgctattgagcatgatgctcttgatattcatgcaaaagtaagaaca
agagatgatggaagaattattcacacaacagcaggaagaatgctcttaaaagctatttta
cctaattttgttccatcagaactttggaatagagttatgaagaaaaaagctattaatgaa
gtggttgattacgttcaaaaacatggcggtataggcgtaacagcaggtttcttagataga
cttaagaacttaggatttaaacatgcaactgaagctggtatatctatctctattgatgat
ataaaaatacctgcaggaaaagaagctaaaatcgctgaatcaaaaaatagagtttttgag
attcaaaaacagtttgaagcgggtcttttaactgaacaagagagatataataaaattatt
gatgtttggactgatacaaacaacacgctagcgactcagatgatggatttagttcaaaca
gacaaagctggatttaactcgattcatatgatggcagactcaggtgctcgtggttcggct
gcacaaattcgtcagcttgctggtatgcgtggacttatggcaaaaccaagtggtgagatt
attgagacaccaattatttctaactttaaagagggattaaatgttgttgagtactttatt
tcaacacacggtgctagaaaaggtcttgccgatactgctctaaaaacagcaaatgcgggt
tatcttactcgtaaacttgttgacgttgctcaaaatgttaagattgttgaacatgattgt
catactcacgagggtatagagatttctgatattagtgatcaaaatactctaattgaatct
ttagaagatagattaaatggtagagttttagcagatgatgtaattgacccaataagcaat
gagatactctttgcagagggaacacttcttgatgaagttagtgctaaagtcatagcagaa
gctggaattaagacggcatatatcagaactccaactacatgtaagagtgaaaatggtatt
tgtgcactatgttatggtgtgaacctagcaacagggcagatagttcgcagaggagaagct
gttggtattattgctgctcagtcaattggtgaacctggtactcagctaacacttagaaca
ttccacgttgggggaactgcaagttcaactgcgcaagagagacaagttgtagctgaaaaa
gagggctttattcgttactataacctaaaaacttatgtttcaaaagagggtagaaatata
gtagcaaaccgtagaaatgcagctgtcttattagtagagccaaagattaaagctccattt
agcggtcgtgttgaaattcaaactgttcatgatgaagtaattattagtgtttcatcaaag
acagatacaattcgttatgtattgcgtaaaaatgagattgctaaaccaaatgagttagct
ggagttggtggacaaatagagggtaaatattacttcccttatgaaagtggtgcagaagtt
caagaatatgagtcaatagttgagacaataaaagatggttggaatgttccaagtcgtatt
ccttatgcttctgaagtgttagttgcaaatggcgcacctgttactcaaaagatttttgca
aaagaggatggagttgttaaatacttccttcttagaggtgactatttagagagatttgaa
ggattaaaagctggttatgaagttattgaaaaaggactttttgcaactgttgtagattca
aataatagagaagcagtacgtcattacattgctcgtggttctattattgtagctgaggac
gatgctgtagttgatccaaaaactcttatcgctaaacctaaaaatgatgaatcaacagta
atagcagagtgggatccatactctaatcctattatttctgagactagcggtacagttaaa
tttgaagatattattattggaacaacagcaactgaacagtatgatgagttaactggtaaa
acacgtttaatgattagtgatcatgttcctgctgaatataagccaacaatagtacttgct
agcgaagatggcgaactattaagataccaagttcaatcaaaaacttctatttatgtagaa
gatggagctaaagttaaagttgctgatattattgcaaagacaccaaaagcacttcaaaaa
tcaagcgatattacagggggtcttcctcgtgtaagtgaactttttgaaggtcgtcgtcca
aaagcaacagcactgatttctgagatagatggtgttgtatcatttggaaaatctctaaga
ggtaaaattagaatcatagttgcttctgataatggaatattaaaagagtattttgttgat
aaatcacacactccagttgtaaatagcggtgactttgtgcacgctggtgagagattaaca
tctggtattatctcttcacatgagctattacgcattatgggtgtgaaaacactttataac
tacctagtaagtgaagtacagcaagtttaccgttctcaaggtgttaatatttcagataag
catattgaagttatatttacacagatgttaagacaggttaaaattcttaaatctggcgat
actaagtttatagaaggtgatttaatctctaaagttaagtttgcgcaagagaatgaaaaa
attataaaacttggcggtcgtccagctattgctgagccattcttggttggtattacaaga
gccgctgtatcagctgatagtattatctctgctgcatctttccaagatactacaaaagta
ttaacagaagctgcagttagtgctaaagttgatgatttaaatgatttaaaagagaacgta
attattggtcgtactattcctgttggaactggtatatataaagatcaagagattatgttt
ggatacaattaa
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integrated database retrieval system
