Sulfurimonas denitrificans: Suden_1767
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Entry
Suden_1767 CDS
T00298
Name
(GenBank) DEAD/DEAH box helicase-like protein
KO
K05592
ATP-dependent RNA helicase DeaD [EC:
5.6.2.7
]
Organism
tdn
Sulfurimonas denitrificans
Pathway
tdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Suden_1767
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdn03019
]
Suden_1767
03009 Ribosome biogenesis [BR:
tdn03009
]
Suden_1767
Enzymes [BR:
tdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.7 DEAD-box RNA helicase
Suden_1767
Messenger RNA biogenesis [BR:
tdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Suden_1767
Ribosome biogenesis [BR:
tdn03009
]
Prokaryotic type
rRNA helicases
Suden_1767
BRITE hierarchy
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Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DEAD
Helicase_C
ResIII
AAA_30
Helicase_RecD
DUF460
SPA
Motif
Other DBs
NCBI-ProteinID:
ABB45041
UniProt:
Q30PP0
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All DBs
Position
1849066..1850688
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AA seq
540 aa
AA seq
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MQENAQTQTEEKLITFDDLGLKKEILRSVKDAGFTVPSPIQAAAIPFILAGRDIVGQAHT
GTGKTAAFGLPALNNINPNDGVGILVITPTRELATQVSDELFKYGRNIGARTVTVYGGSS
YNRQIDLIQRGASVVVATPGRLLDILKKNLLKDFAPSIVVLDEADEMLDMGFLDDINEIF
SYLPSNRQTLLFSATMPKPIKLLAERILDNPEFISITKGETTNTDINQEYYVIEESERDD
AIIRLMDAEACQKSIVFCRTKSEVDRLSNVLSSAGYLANGLHGDMEQRQRETVIKGFKNN
GVKVLVATDVAARGIHVDNISHVFNYHIPFDPESYVHRIGRTGRAGTKGKAITLLTPLEF
KELQRIKTKVGTTMTHAFVPSKNDLRAINLKSIATSIEEHNIYDEAHQILDMLKEDIDEP
TIMFKLVSMILDRQAIQGPNSIGIPAEKLAAILERADKRRDSKGGRGNFRGNRSARPSGD
RNRSGSGDRNRSSSSSDRPRSSEGGDRNARPSGGGYRGTSSTGERSRPSGDRNRTSRSRD
NT seq
1623 nt
NT seq
+upstream
nt +downstream
nt
atgcaagaaaatgcacaaacacagacagaagaaaagttgatcacatttgatgatttaggt
ttaaaaaaagagatacttcgcagtgtcaaagatgctggatttacagttccaagtcctatt
caagcagcggcaattccgtttatattagcggggcgtgacatagttggtcaagctcataca
ggaacaggtaaaacagcggcatttggtcttccagcacttaacaatatcaaccctaatgat
ggtgttggcatactagttatcactccaacgcgtgaactagcgactcaggtaagtgatgaa
cttttcaaatatggcagaaacataggcgctagaactgtaacagtttatggcggaagctct
tataacagacaaattgacttaatccaaagaggtgcaagtgttgttgtcgcaactccagga
agactcttggacatactcaaaaagaaccttttaaaagattttgctcctagcatagttgtt
cttgatgaagctgatgagatgctagatatgggctttttagatgatattaatgagattttc
tcatacttaccatcaaatcgtcaaacacttctattctcagctactatgccaaagccaatc
aagcttcttgctgagagaatcttagataatcctgaatttataagtatcacaaaaggtgaa
actacaaatacagatataaaccaagagtactatgtaattgaagagagtgagagagatgac
gctattatccgtttgatggacgctgaagcttgtcaaaagtctattgtattttgtagaaca
aaaagcgaagtagatagactatcaaatgttttatcaagcgctggatatttagcaaatggt
ttacatggagatatggaacaacgccaacgtgaaacagtgattaaaggttttaaaaacaat
ggtgttaaagttttagttgcaacagacgtggcagctcgtggaatacatgtagataatatt
tcacatgtatttaactaccatattccttttgatcctgaatcttatgttcatagaattggg
cgaacaggacgtgctggaactaaaggtaaagcaattacgcttttaactcctcttgagttt
aaagaacttcaacgtattaaaactaaagttggaactactatgactcacgcctttgttcca
agtaaaaatgatttgcgcgcaattaacctaaaatcaatagctacttcaattgaagagcat
aacatttatgatgaggcacatcagattttagatatgttaaaagaggatattgatgagccg
actatcatgtttaaacttgtatctatgattttagatagacaggcaattcaaggaccaaat
agcataggaattcctgctgagaaactagcagctatcttagaacgtgctgataagagaaga
gattctaaaggtggacgtggaaacttccgtggaaacagaagcgctcgcccaagtggcgat
agaaatcgctctggaagtggagatagaaaccgctcttcaagcagtagtgatagacctcgc
tcaagtgagggtggcgacagaaatgctcgcccaagtggcggtggttaccgtggaacttca
agcacaggtgagagaagccgcccaagcggtgatagaaatcgcacaagcagaagcagagac
taa
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