Sulfurimonas denitrificans: Suden_1931
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Entry
Suden_1931 CDS
T00298
Name
(GenBank) ATP-dependent DNA helicase RecQ
KO
K03654
ATP-dependent DNA helicase RecQ [EC:
5.6.2.4
]
Organism
tdn
Sulfurimonas denitrificans
Pathway
tdn03018
RNA degradation
Brite
KEGG Orthology (KO) [BR:
tdn00001
]
09120 Genetic Information Processing
09123 Folding, sorting and degradation
03018 RNA degradation
Suden_1931
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03019 Messenger RNA biogenesis [BR:
tdn03019
]
Suden_1931
03400 DNA repair and recombination proteins [BR:
tdn03400
]
Suden_1931
Enzymes [BR:
tdn01000
]
5. Isomerases
5.6 Isomerases altering macromolecular conformation
5.6.2 Enzymes altering nucleic acid conformation
5.6.2.4 DNA 3'-5' helicase
Suden_1931
Messenger RNA biogenesis [BR:
tdn03019
]
Prokaryotic type
Bacterial mRNA degradation factors
RNA degradosome components
Helicases
Suden_1931
DNA repair and recombination proteins [BR:
tdn03400
]
Prokaryotic type
DSBR (double strand breaks repair)
NHEJ (non-homologous end-joining)
SHDIR (short-homology-dependent illegitimate recombination)
Supressor
Suden_1931
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
RQC
DEAD
Helicase_C
HRDC
RecQ_Zn_bind
ResIII
Thioredoxin_8
Motif
Other DBs
NCBI-ProteinID:
ABB45205
UniProt:
Q30P76
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All DBs
Position
2014740..2016515
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AA seq
591 aa
AA seq
DB search
MKYKLLKDNFGHNSFRELQEDGVNAILDGRDLLMILPTGGGKSLVYQLPTLLMDGISIVI
SPLIALMQDQVSSLRAQGMSAQMISSAQSRDEVDEIIAQAQNGELKFLYLSPERLNNQAT
IAMLRGLNINFFVVDEAHCISQWGHEFRDDYRALGNLRANFASTPICAFTATSTEHVTED
ILRELRFQNPLLLKGKIFRKNIFISLERRVANGHEQLKLFLARHKKESGIIYVSSRKKAE
ELSLFLNKSGYKSLPYHAGLPQHVREQNFKIFVNDKIDIMVATIAFGMGIDKSNIRFVVH
MSLPKSLENYYQEIGRAGRDGDDAEVIMFFNAADLTQHKRFLDDIQNEEYKEHLSQKIET
IYKYATSEICFHKQIAEYFEDTLDECLTGCDNCANSKEIRENITKEAQMILSAIYKTEQK
FGKNYIIDILRGSKEQKLLANSADKLSVYGIGESRAKRVWYVILERLLELKIVYLGEFSV
LKLTQEAAETLRGKKEIFIRASRLHVSDKAKRVKPRDEEDFDAELFEKLKAKRTQIAGEL
KVPAYIVFSDKVLKNLSVAKPQNRENMLEVNGVAEKKFQLYGAQFLEVFNK
NT seq
1776 nt
NT seq
+upstream
nt +downstream
nt
atgaaatacaaactactcaaagacaactttgggcataacagttttagagagcttcaagaa
gatggtgttaatgccatcttagatggtcgtgacttgcttatgattttaccaactggtggc
ggaaaatcgcttgtttatcagctccctacacttctgatggacggcataagcatagttata
tcgccacttatagcacttatgcaagaccaagtctcttcacttagagcgcaaggaatgagt
gcgcagatgataagctccgcacaaagccgtgatgaagtagatgagataatcgctcaagca
caaaatggcgagttaaagtttttatatctctctcctgagaggctaaacaatcaagccaca
attgcgatgctgcgaggtttaaatataaacttctttgtagtagatgaagcgcactgtatc
tcacaatggggacatgagtttagagatgattatagagcgcttgggaacttaagagcaaac
tttgcatcaactcccatctgcgcatttactgcaacttcaacagagcatgtaactgaggat
atactgcgagagttgagatttcaaaatccgcttctcttaaaggggaaaatatttcgtaaa
aatatttttatctctcttgagcgcagagttgcaaatggacacgaacagctcaaactcttc
ttagcaagacataaaaaagagagcggaatcatctatgtaagctcaagaaaaaaggcagag
gagttaagtctctttctcaataaaagcggttataaatctctgccatatcacgcaggtctg
cctcagcatgtaagagagcaaaacttcaaaatttttgtaaatgacaagatagatattatg
gttgcaaccatagcttttggaatgggaatagataagagtaatatccgttttgtagttcac
atgtcacttccaaaatcattagagaactactatcaagagataggacgagctgggcgagat
ggggatgacgcagaggttattatgttctttaatgcagctgatcttactcaacacaaaaga
tttttggatgatatacaaaatgaggagtataaagagcatctaagccaaaaaatagagact
atctacaaatacgcaacaagtgaaatctgttttcacaagcagatagccgagtactttgaa
gatacgcttgatgagtgtttaactgggtgcgacaattgcgcaaactctaaagagattaga
gagaacatcacaaaagaggctcagatgattctaagtgccatctataaaacagagcagaag
tttggaaaaaactacattatagatattttaagaggttcaaaagagcaaaaactcttagct
aacagtgctgataaactctctgtctatgggattggtgagagtagagccaagcgagtttgg
tatgttatcttagagaggctcttagagctaaaaatagtatatttgggtgagtttagcgtt
ctcaaactaacacaagaagccgcagagacactaagaggcaaaaaagagatttttataaga
gcctcaagactacatgtaagcgataaagcaaagagagtaaaacctagagatgaagaagat
ttcgatgcagaactatttgaaaaattaaaagcaaaacgaacacaaatcgctggtgagcta
aaagttccagcttacatagtcttctcagataaagtactcaaaaatctctccgttgcaaaa
ccgcaaaacagagagaatatgttagaggtaaacggtgttgcagagaagaagtttcagctc
tatggggcgcagtttttagaagtttttaataaataa
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