Candidatus Thiocaldithrix dubininis: QJT80_00960
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Entry
QJT80_00960 CDS
T09759
Name
(GenBank) exodeoxyribonuclease III
KO
K01142
exodeoxyribonuclease III [EC:
3.1.11.2
]
Organism
tdu
Candidatus Thiocaldithrix dubininis
Pathway
tdu03410
Base excision repair
Brite
KEGG Orthology (KO) [BR:
tdu00001
]
09120 Genetic Information Processing
09124 Replication and repair
03410 Base excision repair
QJT80_00960
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03400 DNA repair and recombination proteins [BR:
tdu03400
]
QJT80_00960
Enzymes [BR:
tdu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.11 Exodeoxyribonucleases producing 5'-phosphomonoesters
3.1.11.2 exodeoxyribonuclease III
QJT80_00960
DNA repair and recombination proteins [BR:
tdu03400
]
Prokaryotic type
SSBR (single strand breaks repair)
BER (base exicision repair)
AP endonucleases
QJT80_00960
BRITE hierarchy
SSDB
Ortholog
Paralog
GFIT
Motif
Pfam:
Exo_endo_phos
Exo_endo_phos_2
Motif
Other DBs
NCBI-ProteinID:
WGZ91054
UniProt:
A0AA95H9V1
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All DBs
Position
complement(198385..199161)
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AA seq
258 aa
AA seq
DB search
MRVVSANLNGIRSAASKGFFDWLAQQNADVVCLQESKAQIAQLQDNPQFFPAGYHCHYHD
AQKKGYSGVAIYSRTEPDDVIIGMAHPEFDAEGRYIEARFNNLSVVSLYLPSGTSGDERQ
NAKLSCMQHFDGLFAQMLASGRDYILCGDWNIAHQNIDLKNWKSNQKTTGFLPEERAWLD
KLFGELGFIDSFRAVNPNADEYSWWSLRAAAREKNVGWRIDYQVLSPSLQGCVEHAYIYR
DEAFSDHAPLVHDYTYSL
NT seq
777 nt
NT seq
+upstream
nt +downstream
nt
atgcgtgttgtttccgctaacttaaacggcattcgctcggcagccagtaaaggctttttt
gactggctggcgcaacaaaatgcagatgtcgtgtgtttacaagagagcaaagcgcaaatt
gcccaattacaagataatccgcaattttttccagcgggttatcactgccattatcacgat
gcgcaaaagaaaggttatagcggcgtggcgatttatagccgcactgaaccggatgatgtg
attattggcatggctcatcccgaatttgatgcggaagggcgttatattgaagcacgtttt
aataatctaagcgtggtttcgctgtacttaccgtctggtacatccggcgatgaacggcaa
aacgctaagcttagctgcatgcaacattttgatggcttatttgcgcaaatgttagcatca
gggcgtgattatattttatgtggcgattggaatatcgcgcatcaaaacattgatttaaaa
aactggaaaagcaatcaaaaaaccactggctttttaccagaagaacgcgcttggttagac
aagctattcggggaattaggctttattgatagctttcgcgcggtcaatcctaatgctgat
gaatacagttggtggtcattacgggcagcggctcgtgaaaagaacgtcggttggcgtatt
gattaccaagtgctaagcccttccttacaaggctgtgtcgaacatgcttacatttatcgg
gatgaagccttctccgatcatgcaccattagtccacgattatacctattcattataa
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