Candidatus Thiocaldithrix dubininis: QJT80_02910
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Entry
QJT80_02910 CDS
T09759
Symbol
rnd
Name
(GenBank) ribonuclease D
KO
K03684
ribonuclease D [EC:
3.1.13.5
]
Organism
tdu
Candidatus Thiocaldithrix dubininis
Brite
KEGG Orthology (KO) [BR:
tdu00001
]
09180 Brite Hierarchies
09182 Protein families: genetic information processing
03016 Transfer RNA biogenesis [BR:
tdu03016
]
QJT80_02910 (rnd)
Enzymes [BR:
tdu01000
]
3. Hydrolases
3.1 Acting on ester bonds
3.1.13 Exoribonucleases producing 5'-phosphomonoesters
3.1.13.5 ribonuclease D
QJT80_02910 (rnd)
Transfer RNA biogenesis [BR:
tdu03016
]
Prokaryotic type
3'processing and CCA adding factors
3'processing factors
QJT80_02910 (rnd)
BRITE hierarchy
SSDB
Ortholog
Paralog
Gene cluster
GFIT
Motif
Pfam:
DNA_pol_A_exo1
HRDC
RNAseD_HRDC_C
Motif
Other DBs
NCBI-ProteinID:
WGZ91431
UniProt:
A0AA95H659
LinkDB
All DBs
Position
600604..601770
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AA seq
388 aa
AA seq
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MFDYIATDQQLKNLLQQLDASEWLTLDTEFIRENTYFPKLCLIQIASENVLACIDPLSIK
DLQPLFIWLAEPKRVKVLHSAWQDLELLYHVSGGLLPTPIFDTQVAAAIVGMGDQIGYGR
LVEACVGIDLEKSQARTDWAQRPLTPQQLEYAIDDVRYLRDVYLFLQHEIKQLGREQWLN
KALQRLMDRQTYAIDVQTSWQRVRNLQLLKPAQLAVLRELAKWREQYAVQHNIPRRWIVN
DELLLELARKQPQSIEAIKVLRSMTEELANQYAADWLQCIQAGRAVEKANWPQLPKRRKL
DTELQLVADLLMLVLQKIAQQHELAPQLIATRPQIEKMLVENRSQLAEDWRGALVNDTFQ
GILQGQIQVTVMNQQLQLLKMSTTNPIA
NT seq
1167 nt
NT seq
+upstream
nt +downstream
nt
atgtttgactatattgcaacggatcaacaattaaaaaacttactacaacaattagatgcc
agtgagtggctgacgttagataccgaatttattcgtgaaaatacctattttcccaagctt
tgtttaattcaaattgccagcgaaaacgtgttggcctgtattgatcccctgagtattaag
gatttacagccattatttatttggttggctgagcctaagcgcgtcaaagtattgcattca
gcatggcaagatttagagctgttatatcatgtcagtggtggtttattgcctacgccgatt
ttcgatacacaagtggcggcggctattgttggtatgggggatcagatcggttatgggcgt
ttagtggaagcttgtgtcggcattgatttagaaaaatcgcaagcccgtacggattgggca
caacgccctttaacgccccagcaattagaatacgcgattgatgatgtacgttatttgcgt
gatgtatatttatttttacagcatgaaattaagcaacttgggcgtgagcaatggttaaat
aaagccttgcaacgcctcatggatcgccagacttatgcaattgatgtgcaaaccagttgg
cagcgggtacgcaatttacaactactgaagcctgcgcaattagcggtattacgtgagcta
gctaaatggcgcgaacaatatgcagtgcaacataatattccacgccgctggattgtaaat
gatgaattgttattggagttagcgcgtaaacaaccacaaagcattgaagctatcaaagtg
ttacgcagcatgaccgaggaattagccaatcaatatgcagcggattggttgcaatgtatt
caagcgggtagggcagttgaaaaagcaaactggccgcaattacccaaacgccgtaaatta
gatacggagttacaactggtggcggatttattaatgctggtgttacaaaagattgcacaa
caacatgaacttgcgccacagctcattgctacccgtccacaaattgagaagatgttggtc
gagaaccgcagccaattagccgaggattggcgcggtgcattggtaaatgatacgtttcag
ggtattttgcaagggcagatacaagtgacggttatgaatcagcaattacagttgcttaaa
atgagcacaactaaccccattgcttaa
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